ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2004
Gene content and density in banana ( Musa acuminata) as revealed by genomic sequencing of BAC clones.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.
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Who cites it
11 citing papers in PubMed, 1 synthesis or guideline pooled it, 39 citations in OpenAlex.
- Heterologous oligonucleotide microarrays for transcriptomics in a non-model species; a proof-of-concept study of drought stress in Musa.BMC genomics · 2009Pooled it
- Article
- A Flow Cytometry-Based Assessment of the Genomic Size and Ploidy Level of WildPlants (Basel, Switzerland) · 2023Article
- Article
- Repetitive part of the banana (Musa acuminata) genome investigated by low-depth 454 sequencing.BMC plant biology · 2010Article
- Evaluation of chloroform/methanol extraction to facilitate the study of membrane proteins of non-model plants.Planta · 2010Article
- Insights into the Musa genome: syntenic relationships to rice and between Musa species.BMC genomics · 2008Article
- Domestication, genomics and the future for banana.Annals of botany · 2007Review
- A BAC end view of the Musa acuminata genome.BMC plant biology · 2007Article
- Successful gene tagging in lettuce using the Tnt1 retrotransposon from tobacco.Plant physiology · 2007Article
- SuperSAGE combined with PCR walking allows global gene expression profiling of banana (Musa acuminata), a non-model organism.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2005Article
Corrections and comments
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Authors and funding
3 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The complete sequence of Musa acuminata bacterial artificial chromosome (BAC) clones is presented and, consequently, the first analysis of the banana genome organization. One clone (MuH9) is 82,723 bp long with an overall G+C content of 38.2%. Twelve putative protein-coding sequences were identified, representing a gene density of one per 6.9 kb, which is slightly less than that previously reported for Arabidopsis but similar to rice. One coding sequence was identified as a partial M. acuminata malate synthase, while the remaining sequences showed a similarity to predicted or hypothetical proteins identified in genome sequence data. A second BAC clone (MuG9) is 73,268 bp long with an overall G+C content of 38.5%. Only seven putative coding regions were discovered, representing a gene density of only one gene per 10.5 kb, which is strikingly lower than that of the first BAC. One coding sequence showed significant homology to the soybean ribonucleotide reductase (large subunit). A transition point between coding regions and repeated sequences was found at approximately 45 kb, separating the coding upstream BAC end from its downstream end that mainly contained transposon-like sequences and regions similar to known repetitive sequences of M. acuminata. This gene organization resembles Gramineae genome sequences, where genes are clustered in gene-rich regions separated by gene-poor DNA containing abundant transposons.
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