Evidence map›Paper›PMID 14978281›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2004

A single amino acid of APOBEC3G controls its species-specific interaction with virion infectivity factor (Vif).

Bärbel Schröfelbauer, Darlene Chen, Nathaniel R Landau

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In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 196 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
196citing papers in PubMed, 1 pooled it
11.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

196 citing papers in PubMed, 1 synthesis or guideline pooled it, 312 citations in OpenAlex.

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  18. Epitranscriptomic addition of mGenes & development · 2021
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136 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Bärbel SchröfelbauerInfectious Disease Laboratory, The Salk Institute for Biological Studies, 10010 North Torrey Pines Road, La Jolla, CA 92037, USA.
Darlene Chen
Nathaniel R Landau
Salk Institute for Biological Studies · US

Funding

APOBEC3G/CEM15 Inhibition of Lentivirus ReplicationR01AI058864 · NIAID · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI LANDAU, NATHANIEL R. · 2004 to 2015
$4.5M
Murine Model for HIV-1 ReplicationR01DA014494 · NIDA · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI LANDAU, NATHANIEL R. · 2001 to 2006
$2.4M
NIAID NIH HHS AI 58864NIAID NIH HHS R01 AI058864NIDA NIH HHS DA14494NIDA NIH HHS R01 DA014494
6 · The paper itself

Abstract

The virion infectivity factor (Vif) accessory protein of HIV-1 forms a complex with the cellular cytidine deaminase APOBEC3G (apolipoprotein B mRNA-editing enzyme, catalytic polypeptide-like 3G) to block its antiviral activity. The antiviral property of APOBEC3G is conserved in several mammalian species, but the ability of Vif to block this activity is species-specific. HIV-1 Vif blocks human APOBEC3G but does not block the mouse or African green monkey (AGM) enzyme. Conversely, SIV(AGM) Vif blocks the antiviral activity of AGM but not human APOBEC3G. We demonstrate that the species specificity is caused by a single amino acid difference in APOBEC3G. Replacement of Asp-128 in human APOBEC3G with the Lys-128 of AGM APOBEC3G caused the enzyme to switch its interaction, becoming sensitive to SIV(AGM) Vif and resistant to HIV-1 Vif. Conversely, the reciprocal Lys to Asp switch in AGM APOBEC3G reversed its specificity for Vif. The reversal of biological activity was accompanied by the corresponding switch in the species specificity with which the enzyme physically associated with Vif and was excluded from virions. The charge of the amino acid at position 128 was a critical determinant of species specificity. Based on the crystal structure of the distantly related Escherichia coli cytidine deaminase, we propose that this amino acid is positioned on a solvent-exposed loop of APOBEC3G on the same face of the protein as the catalytic site.

Indexed as

Amino Acid SubstitutionAnimalsAPOBEC-3G DeaminaseBinding SitesChimeraChlorocebus aethiopsCytidine DeaminaseGene Products, vifHumansLentivirusLentivirus InfectionsMacacaNucleoside DeaminasesProteinsProtein Structure, TertiaryRepressor ProteinsAPOBEC-3G DeaminaseAPOBEC3G protein, humanCytidine DeaminaseGene Products, vifNucleoside DeaminasesProteinsRepressor Proteins

Identifiers

PMID14978281
PMCPMC374346
OpenAlexW1640130878

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.