Evidence map›Paper›PMID 14977960›Full record

ArticleInfection and immunity2004

The Burkholderia cepacia epidemic strain marker is part of a novel genomic island encoding both virulence and metabolism-associated genes in Burkholderia cenocepacia.

Adam Baldwin, Pamela A Sokol, Julian Parkhill, Eshwar Mahenthiralingam

Open access · greenAbstract read
In one paragraph

Article in Infection and immunity, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
9.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 140 citations in OpenAlex.

  1. Quorum sensing in theApplied and environmental microbiology · 2026
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  9. Comparative Evolutionary Patterns ofFrontiers in microbiology · 2020
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  10. Loss ofmSphere · 2019
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  14. Frontiers in microbiology · 2017
    Review
  15. Article
  16. Article
  17. Role of quorum sensing in bacterial infections.World journal of clinical cases · 2015
    Review
  18. Article
  19. Article
  20. Article

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Adam BaldwinCardiff School of Biosciences, Cardiff University, Cardiff CF10 3TL, Wales, Canada TN2 4N1.
Pamela A Sokol
Julian Parkhill
Eshwar Mahenthiralingam
Cardiff University · GBUniversity of Calgary · CAWellcome Sanger Institute · GB

Funding

Wellcome Trust
6 · The paper itself

Abstract

The Burkholderia cepacia epidemic strain marker (BCESM) is a useful epidemiological marker for virulent B. cenocepacia strains that infect patients with cystic fibrosis. However, there was no evidence that the original marker, identified by random amplified polymorphic DNA fingerprinting, contributed to pathogenicity. Here we demonstrate that the BCESM is part of a novel genomic island encoding genes linked to both virulence and metabolism. The BCESM was present on a 31.7-kb low-GC-content island that encoded 35 predicted coding sequences (CDSs): an N-acyl homoserine lactone (AHL) synthase gene (cciI) and corresponding transcriptional regulator (cciR), representing the first time cell signaling genes have been found on a genomic island; fatty acid biosynthesis genes; an IS66 family transposase; transcriptional regulator CDSs; amino acid metabolism genes; and a group of hypothetical genes. Mutagenesis of the AHL synthase, amidase (amiI), and porin (opcI) genes on the island was carried out. Testing of the isogenic mutants in a rat model of chronic lung infection demonstrated that the amidase played a role in persistence, while the AHL synthase and porin were both involved in virulence. The island, designated the B. cenocepacia island (cci), is the first genomic island to be defined in the B. cepacia complex and its discovery validates the original epidemiological correlation of the BCESM with virulent CF strains. The features of the cci, which overlap both pathogenicity and metabolism, expand the concept of bacterial pathogenicity islands and illustrate the diversity of accessory functions that can be acquired by lateral gene transfer in bacteria.

Indexed as

Genomic IslandsAmidohydrolasesBase CompositionBase SequenceBurkholderia cepaciaBurkholderia cepacia complexBurkholderia InfectionsComputational BiologyCystic FibrosisDNA, BacterialGenome, BacterialGenomic InstabilityHumansLigasesMolecular EpidemiologyMutagenesis, Site-DirectedamidaseAmidohydrolasesDNA, BacterialLigasesN-acylhomoserine lactone synthasePorins

Identifiers

PMID14977960
PMCPMC356040
OpenAlexW2148703390

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.