Evidence map›Paper›PMID 14976245›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2004

K channel gating by an affinity-switching selectivity filter.

Antonius M J VanDongen

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Gating crosstalk in potassium channels.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. Review
  4. Article
  5. Pore waters regulate ion permeation in a calcium release-activated calcium channel.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author.

Antonius M J VanDongenDepartment of Pharmacology, Duke University, Durham, NC 27710, USA. vando005@mc.duke.edu

Funding

The Molecular Basis of Ion Channel OpeningR01NS031557 · NINDS · DUKE UNIVERSITY · PI VANDONGEN, ANTONIUS M · 1993 to 2004
$1.3M
NMDA RECEPTOR--AGONIST AFFINITY, EFFICACY/TRANSDUCTIONR01MH061506 · NIMH · DUKE UNIVERSITY · PI VANDONGEN, ANTONIUS M · 2001 to 2004
$655k
NIMH NIH HHS MH061506NIMH NIH HHS R01 MH061506NINDS NIH HHS NS031557NINDS NIH HHS R01 NS031557
6 · The paper itself

Abstract

A universal property of ion channels is their ability to alternate stochastically between two permeation states, open and closed. This behavior is thought to be controlled by a steric "gate", a structure that physically impedes ion flow in the closed state and moves out of the way during channel opening. Experiments employing macroscopic currents in the Shaker K channel have suggested a cytoplasmic localization for the gate. Crystallographic structures of the KcsA K channel indeed reveal a cytoplasmic constriction, implying that the gate and selectivity filter are localized to opposite ends of the permeation pathway. However, analysis of K channel subconductance behavior has suggested a strict coupling between channel opening (gating) and permeation. The idea that the selectivity filter is the gate was therefore investigated by using Monte Carlo simulations. Gating is accomplished by allowing the filter to alternate stochastically between two conformations: a high-affinity state, which selectively binds K ions (but not Na ions) and traps them, and a completely nonselective, low-affinity state, which allows both Na and K ions to permeate. The results of these simulations indicate that affinity switching not only endows the selectivity filter with gating abilities, it also allows efficient permeation without jeopardizing ion selectivity. In this model, permeation and gating result from the same process.

Indexed as

AlgorithmsComputer SimulationCrystallography, X-RayIon Channel GatingKineticsModels, BiologicalMonte Carlo MethodPermeabilityPotassium ChannelsShaker Superfamily of Potassium ChannelsPotassium ChannelsShaker Superfamily of Potassium Channels

Identifiers

PMID14976245
PMCPMC365775

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.