Evidence map›Paper›PMID 14973191›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2004

Human microRNA genes are frequently located at fragile sites and genomic regions involved in cancers.

George Adrian Calin, Cinzia Sevignani, Calin Dan Dumitru, Terry Hyslop, Evan Noch, Sai Yendamuri, Masayoshi Shimizu, Sashi Rattan, Florencia Bullrich, Massimo Negrini and 1 more

Registry-linked trialOpen access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT01927354 (Observational Study on the Investigation of the Molecular Mechanism and Clinical Significance of the Interplay Between Twist1 and Other EMT Regulators Through microRNA-29 Family.), which is not on this map. Cited by 1,870 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
1,870citing papers in PubMed, 5 pooled it
50.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT01927354 unknown statusnot on this mapstarted 2012, after this paper: background citation

Observational Study on the Investigation of the Molecular Mechanism and Clinical Significance of the Interplay Between Twist1 and Other EMT Regulators Through microRNA-29 Family.

TypeobservationalSponsorNational Taiwan University HospitalRan2012 to 2014Enrolled100ConditionsHead-and-Neck Squamous Cell Carcinoma
3 · Its place in the literature

Who cites it

1,870 citing papers in PubMed, 5 syntheses or guidelines pooled it, 4,107 citations in OpenAlex.

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1,810 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

George Adrian CalinDepartment of Microbiology and Immunology, Division of Clinical Pharmacology, Biostatistics Section, Kimmel Cancer Center, Thomas Jefferson University, Philadelphia, PA 19107, USA.
Cinzia Sevignani
Calin Dan Dumitru
Terry Hyslop
Evan Noch
Sai Yendamuri
Masayoshi Shimizu
Sashi Rattan
Florencia Bullrich
Massimo Negrini
Carlo M Croce
Thomas Jefferson University · USSidney Kimmel Cancer Center · USUniversity of Ferrara · IT

Funding

X-Ray Crystallography and Macromolecular CharacterizationP30CA056036 · NCI · THOMAS JEFFERSON UNIVERSITY · PI DANIEL P SILVER · 1995 to 2026
$94.8M
Tissue CoreP01CA081534 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KIPPS, THOMAS J · 2000 to 2016
$59.5M
Structural Analysis of TCL-1 and MTCP-1 ProteinsP01CA076259 · NCI · THOMAS JEFFERSON UNIVERSITY · PI CROCE, CARLO M · 1999 to 2003
$6.1M
NCI NIH HHS P01 CA076259NCI NIH HHS P01 CA081534NCI NIH HHS P01CA56036NCI NIH HHS P01CA76259NCI NIH HHS P01CA81534NCI NIH HHS P30 CA056036
6 · The paper itself

Abstract

A large number of tiny noncoding RNAs have been cloned and named microRNAs (miRs). Recently, we have reported that miR-15a and miR-16a, located at 13q14, are frequently deleted and/or down-regulated in patients with B cell chronic lymphocytic leukemia, a disorder characterized by increased survival. To further investigate the possible involvement of miRs in human cancers on a genome-wide basis, we have mapped 186 miRs and compared their location to the location of previous reported nonrandom genetic alterations. Here, we show that miR genes are frequently located at fragile sites, as well as in minimal regions of loss of heterozygosity, minimal regions of amplification (minimal amplicons), or common breakpoint regions. Overall, 98 of 186 (52.5%) of miR genes are in cancer-associated genomic regions or in fragile sites. Moreover, by Northern blotting, we have shown that several miRs located in deleted regions have low levels of expression in cancer samples. These data provide a catalog of miR genes that may have roles in cancer and argue that the full complement of miRs in a genome may be extensively involved in cancers.

Indexed as

Genome, HumanChromosome Fragile SitesChromosome MappingCloning, MolecularDatabases, Nucleic AcidGenes, HomeoboxGenetic MarkersHumansLoss of HeterozygosityMicroRNAsMultigene FamilyNeoplasmsPubMedGenetic MarkersMicroRNAs

Identifiers

PMID14973191
PMCPMC365734
OpenAlexW2150536104

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.