Evidence map›Paper›PMID 14966276›Full record

ArticleMolecular and cellular biology2004

Barrier proteins remodel and modify chromatin to restrict silenced domains.

Masaya Oki, Lourdes Valenzuela, Tomoko Chiba, Takashi Ito, Rohinton T Kamakaka

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 113 citations in OpenAlex.

  1. In thePNAS nexus · 2026
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  10. The Many Roles of BAF (mSWI/SNF) and PBAF Complexes in Cancer.Cold Spring Harbor perspectives in medicine · 2016
    Review
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  15. Chromosome boundary elements and regulation of heterochromatin spreading.Cellular and molecular life sciences : CMLS · 2014
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 4 countries.

Masaya OkiUnit on Chromatin and Transcription, National Institute of Child Health and Human Development, Bethesda, Maryland 20892, USA.
Lourdes Valenzuela
Tomoko Chiba
Takashi Ito
Rohinton T Kamakaka
Eunice Kennedy Shriver National Institute of Child Health and Human Development · USKanazawa University · JPNational Institute of Child Health · PK

Funding

GENETIC AND BIOCHEMICAL STUDY OF SILENCINGZ01HD001904 · NICHD · CHILD HEALTH AND HUMAN DEVELOPMENT · PI KAMAKAKA, ROHINTON T. · 1997 to 1999
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Studies On SilencingZ01HD008731 · NICHD · CHILD HEALTH AND HUMAN DEVELOPMENT · PI KAMAKAKA, ROHINTON T. · 2001 to 2005
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NICHD NIH HHS Z01 HD01904
6 · The paper itself

Abstract

Transcriptionally active and inactive domains are frequently found adjacent to one another in the eukaryotic nucleus. To better understand the underlying mechanisms by which domains maintain opposing transcription patterns, we performed a systematic genomewide screen for proteins that may block the spread of silencing in yeast. This analysis identified numerous proteins with efficient silencing blocking activities, and some of these have previously been shown to be involved in chromatin dynamics. We isolated subunits of Swi/Snf, mediator, and TFIID, as well as subunits of the Sas-I, SAGA, NuA3, NuA4, Spt10p, Rad6p, and Dot1p complexes, as barrier proteins. We demonstrate that histone acetylation and chromatin remodeling occurred at the barrier and correlated with a block to the spread of silencing. Our data suggest that multiple overlapping mechanisms were involved in delimiting silenced and active domains in vivo.

Indexed as

Gene Expression Regulation, FungalGene SilencingAcetylationAspartic Acid EndopeptidasesChromatinGene LibraryHistonesMultienzyme ComplexesNuclear Pore Complex ProteinsNucleic Acid ConformationOpen Reading FramesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTelomereAspartic Acid EndopeptidasesBAR1 protein, S cerevisiaeChromatinHistonesMultienzyme ComplexesNuclear Pore Complex ProteinsSaccharomyces cerevisiae Proteins

Identifiers

PMID14966276
PMCPMC350565
OpenAlexW2094054670

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.