Evidence map›Paper›PMID 14960149›Full record

ArticleThe Biochemical journal2004

Transcriptional regulation of the human TRIF (TIR domain-containing adaptor protein inducing interferon beta) gene.

Matthew P Hardy, Anne F McGGettrick, Luke A J O'Neill

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in The Biochemical journal, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
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  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Matthew P HardyDepartment of Biochemistry and Biotechnology Institute, Trinity College, University of Dublin, College Green, Dublin 2, Ireland. hardym@tcd.ie
Anne F McGGettrick
Luke A J O'Neill
Trinity College Dublin · IE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

TRIF [TIR (Toll/interleukin-1 receptor) domain-containing adaptor protein inducing interferon beta; also known as TICAM-1 (TIR-containing adaptor molecule-1)] is a key adaptor for TLR3 (Toll-like receptor 3)- and TLR4-mediated signalling. We have performed a detailed annotation of the human TRIF gene and fine analysis of the basal and inducible promoter elements lying 5' to the site of initiation of transcription. Human TRIF maps to chromosome 19p13.3 and is flanked upstream by TIP47, which encodes the mannose 6-phosphate receptor binding protein, and downstream by a gene encoding FEM1a, a human homologue of the Caenorhabditis elegans Feminisation-1 gene. Using promoter-reporter deletion constructs, we identified a distal region with the ability to negatively regulate basal transcription and a proximal region containing an Sp1 (stimulating protein 1) site that confers approx. 75% of basal transcriptional activity. TRIF expression can be induced by multiple stimuli, such as the ligands for TLR2, TLR3 and TLR4, and by the pro-inflammatory cytokines tumour necrosis factor alpha and interleukin-1alpha. All of these stimuli act via an NF-kappaB (nuclear factor-kappaB) motif at position -127. In spite of the presence of a STAT1 (signal transduction and activators of transcription 1) motif at position -330, the addition of type I or type II interferon had no effect on TRIF activity. The human TRIF gene would therefore appear to be regulated primarily by NF-kappaB.

Indexed as

Gene Expression RegulationTranscription, GeneticAdaptor Proteins, Vesicular TransportAnimalsBase SequenceBinding SitesCells, CulturedChromosome MappingChromosomes, Human, Pair 19HumansInterleukin-1LuciferasesMembrane GlycoproteinsMiceMolecular Sequence DataNF-kappa BAdaptor Proteins, Vesicular TransportInterleukin-1LuciferasesMembrane GlycoproteinsNF-kappa BReceptors, Cell SurfaceSp1 Transcription FactorTICAM1 protein, humanTLR2 protein, humanTLR3 protein, humanTLR4 protein, humanToll-Like Receptor 2Toll-Like Receptor 3Toll-Like Receptor 4Toll-Like ReceptorsTranscription FactorsTumor Necrosis Factor-alpha

Identifiers

PMID14960149
PMCPMC1224148
OpenAlexW2031980429

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.