Evidence map›Paper›PMID 14871952›Full record

ArticleEukaryotic cell2004

Regulatory network connecting two glucose signal transduction pathways in Saccharomyces cerevisiae.

Aneta Kaniak, Zhixiong Xue, Daniel Macool, Jeong-Ho Kim, Mark Johnston

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 89 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
89citing papers in PubMed, 1 pooled it
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

89 citing papers in PubMed, 1 synthesis or guideline pooled it, 163 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Engineering the acid-tolerant yeastFrontiers in microbiology · 2026
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  10. Review
  11. Engineering ofEngineering microbiology · 2023
    Review
  12. Article
  13. Article
  14. D-Xylose Sensing inInternational journal of molecular sciences · 2021
    Review
  15. Article
  16. Article
  17. Sugar Sensing and Signaling inFrontiers in microbiology · 2019
    Review
  18. Proteome analysis of xylose metabolism inBiotechnology for biofuels · 2019
    Article
  19. Article
  20. A role for Candida albicans superoxide dismutase enzymes in glucose signaling.Biochemical and biophysical research communications · 2018
    Article

29 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Aneta KaniakDepartment of Genetics, Washington University School of Medicine, St. Louis, Missouri 63110, USA.
Zhixiong Xue
Daniel Macool
Jeong-Ho Kim
Mark Johnston
Washington University in St. Louis · USDuPont (United States) · US

Funding

GLUCOSE SENSING AND SIGNALLING IN YEASTR01GM032540 · NIGMS · WASHINGTON UNIVERSITY · PI JOHNSTON, HENRY MARK · 1985 to 2017
$5.7M
NIGMS NIH HHS R01 GM032540PHS HHS R01-32540
6 · The paper itself

Abstract

The yeast Saccharomyces cerevisiae senses glucose, its preferred carbon source, through multiple signal transduction pathways. In one pathway, glucose represses the expression of many genes through the Mig1 transcriptional repressor, which is regulated by the Snf1 protein kinase. In another pathway, glucose induces the expression of HXT genes encoding glucose transporters through two glucose sensors on the cell surface that generate an intracellular signal that affects function of the Rgt1 transcription factor. We profiled the yeast transcriptome to determine the range of genes targeted by this second pathway. Candidate target genes were verified by testing for Rgt1 binding to their promoters by chromatin immunoprecipitation and by measuring the regulation of the expression of promoter lacZ fusions. Relatively few genes could be validated as targets of this pathway, suggesting that this pathway is primarily dedicated to regulating the expression of HXT genes. Among the genes regulated by this glucose signaling pathway are several genes involved in the glucose induction and glucose repression pathways. The Snf3/Rgt2-Rgt1 glucose induction pathway contributes to glucose repression by inducing the transcription of MIG2, which encodes a repressor of glucose-repressed genes, and regulates itself by inducing the expression of STD1, which encodes a regulator of the Rgt1 transcription factor. The Snf1-Mig1 glucose repression pathway contributes to glucose induction by repressing the expression of SNF3 and MTH1, which encodes another regulator of Rgt1, and also regulates itself by repressing the transcription of MIG1. Thus, these two glucose signaling pathways are intertwined in a regulatory network that serves to integrate the different glucose signals operating in these two pathways.

Indexed as

Signal TransductionBase Sequencebeta-GalactosidaseBiological TransportBlotting, WesternCarbonChromatinDNA-Binding ProteinsGenes, ReporterGenotypeGlucoseModels, BiologicalOligonucleotide Array Sequence AnalysisOligonucleotidesPlasmidsPrecipitin Testsbeta-GalactosidaseCarbonChromatinDNA-Binding ProteinsGlucoseMIG1 protein, S cerevisiaeOligonucleotidesProtein Serine-Threonine KinasesRepressor ProteinsRGT1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSNF1-related protein kinasesTrans-ActivatorsTranscription Factors

Identifiers

PMID14871952
PMCPMC329515
OpenAlexW2160014215

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.