Evidence map›Paper›PMID 14766836›Full record

ArticleJournal of clinical microbiology2004

Genotypic analysis of Mycobacterium tuberculosis in Bangladesh and prevalence of the Beijing strain.

Sayera Banu, Stephen V Gordon, Si Palmer, M Rizaul Islam, Shakeel Ahmed, Khan Mashrequl Alam, Stewart T Cole, Roland Brosch

Erratum issuedAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

  1. Trial
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  4. Spoligotype Diversity ofInternational journal of microbiology · 2020
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4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

8 authors.

Sayera BanuICDDR,B: Centre for Health and Population Research, Dhaka-1000, Bangladesh. sbanu@icddrb.org
Stephen V Gordon
Si Palmer
M Rizaul Islam
Shakeel Ahmed
Khan Mashrequl Alam
Stewart T Cole
Roland Brosch

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genotypic analysis was performed on 48 Mycobacterium tuberculosis complex strains collected from a hospital in Dhaka city. Deletion analysis showed that the isolates were all M. tuberculosis; 13 of them were found to be of the "ancestral" type, while 35 were of the "modern" type, indicating that both endemic (ancestral type) and epidemic (modern type) strains cause tuberculosis in Bangladesh. Genotyping based on the spoligotype and variable-number tandem repeats (VNTR) of mycobacterial interspersed repetitive units (MIRU) was also done. A total of 34 strains (71%) were grouped by spoligotyping into nine different clusters; the largest comprised 15 isolates of the Beijing genotype, whereas the remaining eight clusters consisted of two to five isolates. MIRU-VNTR typing detected 32 different patterns among 44 tested strains, and the 15 Beijing strains were further discriminated by MIRU-VNTR typing (7 distinct patterns for the 15 isolates). These results indicate that MIRU-VNTR typing, along with spoligotyping and deletion analysis, can be used effectively for molecular epidemiological studies to determine ongoing transmission clusters; to our knowledge, this is the first report about the type of strains prevailing in Bangladesh.

Indexed as

AdultBangladeshDNA, BacterialFemaleGenotypeHumansMaleMiddle AgedMinisatellite RepeatsMycobacterium tuberculosisPolymerase Chain ReactionPolymorphism, GeneticPrevalenceSequence DeletionTuberculosisDNA, Bacterial

Identifiers

PMID14766836
PMCPMC344461

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.