Evidence map›Paper›PMID 14766571›Full record

ArticleApplied and environmental microbiology2004

Multi-virulence-locus sequence typing of Listeria monocytogenes.

Wei Zhang, Bhushan M Jayarao, Stephen J Knabel

Erratum issuedAbstract readEvaluation Study
In one paragraph

Article in Applied and environmental microbiology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Prevalence and Antimicrobial Resistance ofFoods (Basel, Switzerland) · 2024
    Article
  5. Characterization ofAntibiotics (Basel, Switzerland) · 2024
    Article
  6. Impaired meningeal lymphatic drainage inFrontiers in immunology · 2024
    Article
  7. Review
  8. Pseudo-outbreak ofInfection control and hospital epidemiology · 2023
    Article
  9. The Prevalence and Antibiotic-Resistant ofFoods (Basel, Switzerland) · 2023
    Review
  10. Food science & nutrition · 2022
    Review
  11. Article
  12. Diversity ofFoods (Basel, Switzerland) · 2021
    Article
  13. Review
  14. Article
  15. Importance ofIranian journal of veterinary research · 2019
    Review
  16. Review
  17. Article
  18. Use of omics methods for the advancement of food quality and food safety.Animal frontiers : the review magazine of animal agriculture · 2018
    Article
  19. Epidemiological burden ofIranian journal of basic medical sciences · 2018
    Review
  20. Article

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

3 authors.

Wei ZhangDepartment of Food Science, The Pennsylvania State University, University Park, Pennsylvania 16802, USA. wuz100@psu.edu
Bhushan M Jayarao
Stephen J Knabel

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A multi-virulence-locus sequence typing (MVLST) scheme was developed for subtyping Listeria monocytogenes, and the results obtained using this scheme were compared to those of pulsed-field gel electrophoresis (PFGE) and the published results of other typing methods, including ribotyping (RT) and multilocus sequence typing (MLST). A set of 28 strains (eight different serotypes and three known genetic lineages) of L. monocytogenes was selected from a strain collection (n > 1,000 strains) to represent the genetic diversity of this species. Internal fragments (ca. 418 to 469 bp) of three virulence genes (prfA, inlB, and inlC) and three virulence-associated genes (dal, lisR, and clpP) were sequenced and analyzed. Multiple DNA sequence alignment identified 10 (prfA), 19 (inlB), 13 (dal), 10 (lisR), 17 (inlC), and 16 (clpP) allelic types and a total of 28 unique sequence types. Comparison of MVLST with automated EcoRI-RT and PFGE with ApaI enzymatic digestion showed that MVLST was able to differentiate strains that were indistinguishable by RT (13 ribotypes; discrimination index = 0.921) or PFGE (22 profiles; discrimination index = 0.970). Comparison of MVLST with housekeeping-gene-based MLST analysis showed that MVLST provided higher discriminatory power for serotype 1/2a and 4b strains than MLST. Cluster analysis based on the intragenic sequences of the selected virulence genes indicated a strain phylogeny closely related to serotypes and genetic lineages. In conclusion, MVLST may improve the discriminatory power of MLST and provide a convenient tool for studying the local epidemiology of L. monocytogenes.

Indexed as

Sequence Analysis, DNAAmino Acid SequenceBacterial ProteinsBacterial Typing TechniquesCluster AnalysisElectrophoresis, Gel, Pulsed-FieldHumansListeria monocytogenesListeriosisMolecular Sequence DataRecombination, GeneticRibotypingSelection, GeneticVirulenceBacterial Proteins

Identifiers

PMID14766571
PMCPMC348834

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.