Evidence map›Paper›PMID 14761988›Full record

ArticleJournal of bacteriology2004

Integration of environmental signals controls expression of Bordetella heme utilization genes.

Carin K Vanderpool, Sandra K Armstrong

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Role and regulation of heme iron acquisition in gram-negative pathogens.Frontiers in cellular and infection microbiology · 2013
    Review
  3. Article
  4. Article
  5. New insights into S2P signaling cascades: regulation, variation, and conservation.Protein science : a publication of the Protein Society · 2010
    Review
  6. Article
  7. Temporal signaling and differential expression of Bordetella iron transport systems: the role of ferrimones and positive regulators.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2009
    Review
  8. Bacterial heme-transport proteins and their heme-coordination modes.Archives of biochemistry and biophysics · 2009
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Carin K VanderpoolDepartment of Microbiology, University of Minnesota Medical School, Minneapolis, Minnesota 55455-0312, USA.
Sandra K Armstrong
University of Minnesota Medical Center · US

Funding

IRON ACQUISITION IN BORDETELLA PERTUSSISR01AI031088 · NIAID · UNIVERSITY OF MINNESOTA TWIN CITIES · PI ARMSTRONG, SANDRA KAY · 1998 to 2014
$3.2M
MOLECULAR MECHANISMS OF INFECTIOUS DISEASE TRAININGT32AI007421 · NIAID · UNIVERSITY OF MINNESOTA TWIN CITIES · PI HAASE, ASHLEY T. · 1995 to 2004
$1.2M
NIAID NIH HHS R01 AI031088NIAID NIH HHS R01 AI-31088NIAID NIH HHS T32 AI007421NIAID NIH HHS T32 AI-07421
6 · The paper itself

Abstract

The Bordetella pertussis heme utilization gene cluster hurIR bhuRSTUV encodes regulatory and transport functions required for assimilation of iron from heme and hemoproteins. Expression of the bhu genes is iron regulated and heme inducible. The putative extracytoplasmic function (ECF) sigma factor, HurI, is required for heme-responsive bhu gene expression. In this study, transcriptional activation of B. pertussis bhu genes in response to heme compounds was shown to be dose dependent and specific for heme; protoporphyrin IX and other heme structural analogs did not activate bhu gene expression. Two promoters controlling expression of the heme utilization genes were mapped by primer extension analysis. The hurI promoter showed similarity to sigma(70)-like promoters, and its transcriptional activity was iron regulated and heme independent. A second promoter identified upstream of bhuR exhibited little similarity to previously characterized ECF sigma factor-dependent promoters. Expression of bhuR was iron regulated, heme responsive, and hurI dependent in B. pertussis, as shown in a previous study with Bordetella bronchiseptica. Further analyses showed that transcription originating at a distal upstream site and reading through the hurR-bhuR intergenic region contributes to bhuR expression under iron starvation conditions in the absence of heme inducer. The pattern of regulation of the readthrough transcript was consistent with transcription from the hurI promoter. The positions and regulation of the two promoters within the hur-bhu gene cluster influence the production of heme transport machinery so that maximal expression of the bhu genes occurs under iron starvation conditions only in the presence of heme iron sources.

Indexed as

Gene Expression Regulation, BacterialAmino Acid SequenceBacterial ProteinsBase SequenceBordetellaDNA-Directed RNA PolymerasesHemeMolecular Sequence DataPromoter Regions, GeneticReceptors, Cell SurfaceSigma FactorTranscription, GeneticBacterial ProteinsBhuR protein, Bordetella pertussisDNA-Directed RNA PolymerasesHemeReceptors, Cell SurfaceRNA polymerase sigma 70Sigma Factor

Identifiers

PMID14761988
PMCPMC344224
OpenAlexW2147445149

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.