ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2004
A new cacao linkage map based on codominant markers: development and integration of 201 new microsatellite markers.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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29 citing papers in PubMed.
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- Assembly and comparative analysis of the complete mitochondrial genome of the Maclura tricuspidata.BMC genomics · 2026Article
- Complete chloroplast genome sequence of Pachystachys lutea Nees: genome structure, adaptive evolution, and phylogenetic relationships.BMC genomic data · 2025Article
- Interactions of Different Species ofMicroorganisms · 2023Review
- Sequencing and analysis of the complete mitochondrial genomes of Toona sinensis and Toona ciliata reveal evolutionary features of Toona.BMC genomics · 2023Article
- The chloroplast genome of Farsetia hamiltonii Royle, phylogenetic analysis, and comparative study with other members of Clade C of Brassicaceae.BMC plant biology · 2022Article
- Article
- Initial Complete Chloroplast Genomes ofFrontiers in genetics · 2020Article
- Cacao biotechnology: current status and future prospects.Plant biotechnology journal · 2018Review
- Genome of wild olive and the evolution of oil biosynthesis.Proceedings of the National Academy of Sciences of the United States of America · 2017Article
- Report on the development of putative functional SSR and SNP markers in passion fruits.BMC research notes · 2017Article
- A Larger Chocolate Chip-Development of a 15KFrontiers in plant science · 2017Article
- The Complete Chloroplast Genome of Chinese Bayberry (Frontiers in plant science · 2017Article
- Identification of candidate genes involved in Witches' broom disease resistance in a segregating mapping population of Theobroma cacao L. in Brazil.BMC genomics · 2016Article
- Assembly and analysis of the completeSpringerPlus · 2016Article
- The Whole Genome Assembly and Comparative Genomic Research of Thellungiella parvula (Extremophile Crucifer) Mitochondrion.International journal of genomics · 2016Article
- The complete chloroplast genome sequence of the relict woody plant Metasequoia glyptostroboides Hu et Cheng.Frontiers in plant science · 2015Article
- The first genetic linkage map of Eucommia ulmoides.Journal of genetics · 2014Article
- Pervasive effects of a dominant foliar endophytic fungus on host genetic and phenotypic expression in a tropical tree.Frontiers in microbiology · 2014Article
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Authors and funding
11 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
A linkage map of cacao based on codominant markers has been constructed by integrating 201 new simple sequence repeats (SSR) developed in this study with a number of isoenzymes, restriction fragment length polymorphisms (RFLP), microsatellite markers and resistance and defence gene analogs (Rgenes-RFLP) previously mapped in cacao. A genomic library enriched for (GA)(n) and (CA)(n) was constructed, and 201 new microsatellite loci were mapped on 135 individuals from the same mapping population used to establish the first reference maps. This progeny resulted from a cross between two heterozygous cacao clones: an Upper-Amazon Forastero (UPA 402) and a Trinitario (UF 676). The new map contains 465 markers (268 SSRs, 176 RFLPs, five isoenzymes and 16 Rgenes-RFLP) arranged in ten linkage groups corresponding to the haploid chromosome number of cacao. Its length is 782.8 cM, with an average interval distance between markers of 1.7 cM. The new microsatellite markers were distributed throughout all linkage groups of the map, but their distribution was not random. The length of the map established with only SSRs was 769.6 cM, representing 94.8% of the total map. The current level of genome coverage is approximately one microsatellite every 3 cM. This new reference map provides a set of useful markers that is transferable across different mapping populations and will allow the identification and comparison of the most important regions involved in the variation of the traits of interest and the development of marker-assisted selection strategies.
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