Evidence map›Paper›PMID 14752009›Full record

ArticleGenes & development2004

Acf1 confers unique activities to ACF/CHRAC and promotes the formation rather than disruption of chromatin in vivo.

Dmitry V Fyodorov, Michael D Blower, Gary H Karpen, James T Kadonaga

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 99 papers.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

99 citing papers in PubMed, 176 citations in OpenAlex.

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  12. IMITATION SWITCH is required for normal chromatin structure and gene repression in PRC2 target domains.Proceedings of the National Academy of Sciences of the United States of America · 2021
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39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Dmitry V FyodorovSection of Molecular Biology, University of California at San Diego, La Jolla, CA 92093, USA.
Michael D Blower
Gary H Karpen
James T Kadonaga
University of California, San Diego · USSalk Institute for Biological Studies · USUniversity of California, Berkeley · US

Funding

DNA REPLICATION COUPLED CHROMATIN ASSEMBLYR01GM058272 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KADONAGA, JAMES T. · 1999 to 2015
$4.8M
Determinants of Centromere Identity in DrosophilaR01GM066272 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI KARPEN, GARY H · 2004 to 2011
$3.4M
NUCLEAR ORGANIZATION AND FUNCTION IN DROSOPHILAR01GM061169 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI KARPEN, GARY H. · 2001 to 2006
$1.3M
DROSOPHILA CENTROMERE PROTEIN GENESR01GM054549 · NIGMS · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI KARPEN, GARY H. · 1996 to 2000
$82k
NIGMS NIH HHS GM 54549NIGMS NIH HHS GM 58272NIGMS NIH HHS GM 61169NIGMS NIH HHS R01 GM058272NIGMS NIH HHS R01 GM061169NIGMS NIH HHS R01 GM066272
6 · The paper itself

Abstract

Chromatin assembly is required for the duplication of chromosomes. ACF (ATP-utilizing chromatin assembly and remodeling factor) catalyzes the ATP-dependent assembly of periodic nucleosome arrays in vitro, and consists of Acf1 and the ISWI ATPase. Acf1 and ISWI are also subunits of CHRAC (chromatin accessibility complex), whose biochemical activities are similar to those of ACF. Here we investigate the in vivo function of the Acf1 subunit of ACF/CHRAC in Drosophila. Although most Acf1 null animals die during the larval-pupal transition, Acf1 is not absolutely required for viability. The loss of Acf1 results in a decrease in the periodicity of nucleosome arrays as well as a shorter nucleosomal repeat length in bulk chromatin in embryos. Biochemical experiments with Acf1-deficient embryo extracts further indicate that ACF/CHRAC is a major chromatin assembly factor in Drosophila. The phenotypes of flies lacking Acf1 suggest that ACF/CHRAC promotes the formation of repressive chromatin. The acf1 gene is involved in the establishment and/or maintenance of transcriptional silencing in pericentric heterochromatin and in the chromatin-dependent repression by Polycomb group genes. Moreover, cells in animals lacking Acf1 exhibit an acceleration of progression through S phase, which is consistent with a decrease in chromatin-mediated repression of DNA replication. In addition, acf1 genetically interacts with nap1, which encodes the NAP-1 nucleosome assembly protein. These findings collectively indicate that ACF/CHRAC functions in the assembly of periodic nucleosome arrays that contribute to the repression of genetic activity in the eukaryotic nucleus.

Indexed as

Adenosine TriphosphatasesAnimalsCell Cycle ProteinsChromatinChromatin Assembly and DisassemblyDrosophilaDrosophila ProteinsHistonesLarvaNuclear ProteinsNucleosome Assembly Protein 1Polycomb Repressive Complex 1ProteinsS PhaseTranscription FactorsAcf protein, DrosophilaAdenosine TriphosphatasesCell Cycle ProteinsChromatinDrosophila ProteinsHistonesNap1 protein, DrosophilaNuclear ProteinsNucleosome Assembly Protein 1Pc protein, DrosophilaPolycomb Repressive Complex 1ProteinsTranscription Factors

Identifiers

PMID14752009
PMCPMC324423
OpenAlexW2135232391

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.