Evidence map›Paper›PMID 14742210›Full record

ArticleAntimicrobial agents and chemotherapy2004

Differential gene expression in auristatin PHE-treated Cryptococcus neoformans.

Tanja Woyke, Michael E Berens, Dominique B Hoelzinger, George R Pettit, Günther Winkelmann, Robin K Pettit

Open access · greenAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Tanja WoykeCancer Research Institute, Arizona State University, Tempe, Arizona 85287, USA.
Michael E Berens
Dominique B Hoelzinger
George R Pettit
Günther Winkelmann
Robin K Pettit
Institute of Cancer Research · CATranslational Genomics Research Institute · USArizona State University · USUniversity of Tübingen · DE

Funding

Molecular Target Focused Discovery of Anticancer DrugsR01CA090441 · NCI · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI PETTIT, GEORGE R · 2001 to 2010
$4.8M
OUTSTANDING INVESTIGATORR35CA044344 · NCI · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI PETTIT, GEORGE R · 1989 to 2000
$795k
Molecular Target Focused Discovery of Anticancer DrugsR56CA090441 · NCI · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI PETTIT, GEORGE R · 2007 to 2007
$498k
NCI NIH HHS CA44344-08-12NCI NIH HHS CA90441-01NCI NIH HHS R01 CA090441NCI NIH HHS R56 CA090441
6 · The paper itself

Abstract

The antifungal pentapeptide auristatin PHE was recently shown to interfere with microtubule dynamics and nuclear and cellular division in the opportunistic pathogen Cryptococcus neoformans. To gain a broader understanding of the cellular response of C. neoformans to auristatin PHE, mRNA differential display (DD) and reverse transcriptase PCR (RT-PCR) were applied. Examination of approximately 60% of the cell transcriptome from cells treated with 1.5 times the MIC (7.89 micro M) of auristatin PHE for 90 min revealed 29 transcript expression differences between control and drug-treated populations. Differential expression of seven of the transcripts was confirmed by RT-PCR, as was drug-dependent modulation of an additional seven transcripts by RT-PCR only. Among genes found to be differentially expressed were those encoding proteins involved in transport, cell cycle regulation, signal transduction, cell stress, DNA repair, nucleotide metabolism, and capsule production. For example, RHO1 and an open reading frame (ORF) encoding a protein with 91% similarity to the Schizophyllum commune 14-3-3 protein, both involved in cell cycle regulation, were down-regulated, as was the gene encoding the multidrug efflux pump Afr1p. An ORF encoding a protein with 57% identity to the heat shock protein HSP104 in Pleurotus sajor-caju was up-regulated. Also, three transcripts of unknown function were responsive to auristatin PHE, which may eventually contribute to the elucidation of the function of their gene products. Further study of these differentially expressed genes and expression of their corresponding proteins are warranted to evaluate how they may be involved in the mechanism of action of auristatin PHE. This information may also contribute to an explanation of the selectivity of auristatin PHE for C. neoformans. This is the first report of drug action using DD in C. neoformans.

Indexed as

Antifungal AgentsBiological Transport, ActiveCell CycleCloning, MolecularCryptococcus neoformansCulture MediaDNA, ComplementaryDNA RepairFungal ProteinsGene Expression Regulation, FungalMicrobial Sensitivity TestsOligopeptidesPurinesReverse Transcriptase Polymerase Chain ReactionRNA, FungalRNA, MessengerAntifungal Agentsauristatin PHECulture MediaDNA, ComplementaryFungal ProteinsOligopeptidesPurinesRNA, FungalRNA, Messenger

Identifiers

PMID14742210
PMCPMC321525
OpenAlexW2140436362

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.