Evidence map›Paper›PMID 14722271›Full record

ArticleJournal of virology2004

T-cell subsets that harbor human immunodeficiency virus (HIV) in vivo: implications for HIV pathogenesis.

Jason M Brenchley, Brenna J Hill, David R Ambrozak, David A Price, Francisco J Guenaga, Joseph P Casazza, Janaki Kuruppu, Javaidia Yazdani, Stephen A Migueles, Mark Connors and 3 more

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 239 papers.

0numbers the graph read from it
0cells of the map it votes in
239citing papers in PubMed
7.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

239 citing papers in PubMed, 378 citations in OpenAlex.

  1. Trial
  2. Trial
  3. Trial
  4. Trial
  5. Trial
  6. Trial
  7. Trial
  8. The immunophenotype and proviral landscape of HIV-infected CD4 T cells during antiretroviral therapy.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. The Complex Dysregulations of CD4 T Cell Subtypes in HIV Infection.International journal of molecular sciences · 2024
    Review
  19. Review
  20. Article

179 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Jason M BrenchleyHuman Immunology Section, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland 20892, USA.
Brenna J Hill
David R Ambrozak
David A Price
Francisco J Guenaga
Joseph P Casazza
Janaki Kuruppu
Javaidia Yazdani
Stephen A Migueles
Mark Connors
Mario Roederer
Daniel C Douek
Richard A Koup
Atotech (United States) · USNational Institute of Allergy and Infectious Diseases · USInstitut de Recherche Vaccinale · FRThe University of Texas Southwestern Medical Center · US

Funding

Tfh and B cells in HIV/SIV pathogenesis and vaccinationZIAAI005015 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI KOUP, RICHARD A · 2009 to 2025
$24.1M
HIV/SIV Replication In VivoZIAAI005014 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI KOUP, RICHARD A · 2009 to 2025
$22.7M
Mechanisms Of Immune Mediated Restriction Of HIV Replication In LTNPZIAAI000855 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI CONNORS, MARK · 2009 to 2025
$20.0M
Functional And Phenotypic Characterization Of T Cells In ManZIAAI005021 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI ROEDERER, MARIO · 2009 to 2022
$14.4M
T Cell Dynamics In SIV-infected MacaquesZIAAI005019 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI ROEDERER, MARIO · 2009 to 2014
$3.5M
Mechanisms Of Immune Mediated Restriction Of HIV Replication In LTNPZ01AI000855 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI CONNORS, MARK · 1999 to 2008
$2.9M
T Cell Immune Responses To HIV And Other PathogensZ01AI005015 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI KOUP, RICHARD A · 2002 to 2008
$2.6M
HIV Infection In Vivo And In VitroZ01AI005014 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI KOUP, RICHARD A · 2002 to 2008
$1.9M
Functional And Phenotypic Characterization Of T Cells In ManZ01AI005021 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI ROEDERER, MARIO · 2002 to 2008
$1.5M
T Cell Dynamics In SIV-infected MacaquesZ01AI005019 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI ROEDERER, MARIO · 2002 to 2008
$871k
6 · The paper itself

Abstract

Identification of T-cell subsets that are infected in vivo is essential to understanding the pathogenesis of human immunodeficiency virus (HIV) disease; however, this goal has been beset with technical challenges. Here, we used polychromatic flow cytometry to sort multiple T-cell subsets to 99.8% purity, followed by quantitative PCR to quantify HIV gag DNA directly ex vivo. We show that resting memory CD4(+) T cells are the predominantly infected cells but that terminally differentiated memory CD4(+) T cells contain 10-fold fewer copies of HIV DNA. Memory CD8(+) T cells can also be infected upon upregulation of CD4; however, this is infrequent and HIV-specific CD8(+) T cells are not infected preferentially. Naïve CD4(+) T-cell infection is rare and principally confined to those peripheral T cells that have proliferated. Furthermore, the virus is essentially absent from naïve CD8(+) T cells, suggesting that the thymus is not a major source of HIV-infected T cells in the periphery. These data illuminate the underlying mechanisms that distort T-cell homeostasis in HIV infection.

Indexed as

AdultCD4-Positive T-LymphocytesCD8-Positive T-LymphocytesDNA, ViralFemaleFlow CytometryGene Products, gagHIV-1HIV InfectionsHumansImmunologic MemoryLymphocyte ActivationMaleMiddle AgedT-Lymphocyte SubsetsDNA, ViralGene Products, gag

Identifiers

PMID14722271
PMCPMC321406
OpenAlexW2158676450

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.