Evidence map›Paper›PMID 14701750›Full record

ArticleMolecular and cellular biology2004

Dynamics of human immunodeficiency virus transcription: P-TEFb phosphorylates RD and dissociates negative effectors from the transactivation response element.

Koh Fujinaga, Dan Irwin, Yehong Huang, Ran Taube, Takeshi Kurosu, B Matija Peterlin

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 219 papers.

0numbers the graph read from it
0cells of the map it votes in
219citing papers in PubMed
3.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

219 citing papers in PubMed, 358 citations in OpenAlex.

  1. Trial
  2. Structural basis for P-TEFb association with BRD4.bioRxiv : the preprint server for biology · 2026
    Article
  3. Targeting CDKs in the RNAPII transcription cycle.Nature reviews. Drug discovery · 2026
    Review
  4. Review
  5. Review
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. HIV-1 latency: From acquaintance to confidant.Journal of virus eradication · 2025
    Review
  12. Article
  13. Review
  14. Toward structural understanding of eukaryotic transcription elongation.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2025
    Review
  15. Review
  16. Review
  17. Article
  18. Article
  19. Review
  20. Article

159 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Koh FujinagaDepartment of Medicine, Rosalind Russell Medical Research Center, University of California at San Francisco, 3rd and Parnassus Avenue, San Francisco, CA 94143-0703, USA. kxf32@cwru.edu
Dan Irwin
Yehong Huang
Ran Taube
Takeshi Kurosu
B Matija Peterlin
University of California, San Francisco · USUniversity School · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The elongation of transcription is a highly regulated process that requires negative and positive effectors. By binding the double-stranded stem in the transactivation response (TAR) element, RD protein from the negative transcription elongation factor (NELF) inhibits basal transcription from the long terminal repeat of the human immunodeficiency virus type 1 (HIVLTR). Tat and its cellular cofactor, the positive transcription elongation factor b (P-TEFb), overcome this negative effect. Cdk9 in P-TEFb also phosphorylates RD at sites next to its RNA recognition motif. A mutant RD protein that mimics its phosphorylated form no longer binds TAR nor represses HIV transcription. In sharp contrast, a mutant RD protein that cannot be phosphorylated by P-TEFb functions as a dominant-negative effector and inhibits Tat transactivation. These results better define the transition from abortive to productive transcription and thus replication of HIV.

Indexed as

HIV Long Terminal RepeatCell LineChromosomal Proteins, Non-HistoneGene Products, tatHIV-1HumansModels, BiologicalNuclear ProteinsPhosphorylationPositive Transcriptional Elongation Factor BProtein BindingRecombinant Fusion Proteinstat Gene Products, Human Immunodeficiency VirusTranscriptional Elongation FactorsTranscription FactorsTranscription, GeneticChromosomal Proteins, Non-HistoneGene Products, tatnegative elongation factorNuclear ProteinsPositive Transcriptional Elongation Factor BRecombinant Fusion ProteinsSPT5 transcriptional elongation factortat Gene Products, Human Immunodeficiency VirusTranscriptional Elongation FactorsTranscription Factors

Identifiers

PMID14701750
PMCPMC343783
OpenAlexW2167778463

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.