Evidence map›Paper›PMID 14701749›Full record

ArticleMolecular and cellular biology2004

The origin recognition complex and Sir4 protein recruit Sir1p to yeast silent chromatin through independent interactions requiring a common Sir1p domain.

Melissa E Bose, Kristopher H McConnell, Kelly A Gardner-Aukema, Ulrika Müller, Michael Weinreich, James L Keck, Catherine A Fox

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 70 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Mechanisms and regulation of DNA replication initiation in eukaryotes.Critical reviews in biochemistry and molecular biology · 2017
    Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Sirtuins in epigenetic regulation.Chemical reviews · 2015
    Review
  12. Article
  13. Article
  14. Review
  15. Review
  16. Palmitoylation controls the dynamics of budding-yeast heterochromatin via the telomere-binding protein Rif1.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Melissa E BoseDepartment of Biomolecular Chemistry, 587 MSC, University of Wisconsin Medical School, 1300 University Avenue, Madison, WI 43706-1532, USA.
Kristopher H McConnell
Kelly A Gardner-Aukema
Ulrika Müller
Michael Weinreich
James L Keck
Catherine A Fox
University of Wisconsin–Madison · USVan Andel Institute · US

Funding

Origin Recognition Complex at Transcriptional SilencersR01GM056890 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI FOX, CATHERINE A · 1998 to 2020
$6.4M
NIGMS NIH HHS GM 056890NIGMS NIH HHS R01 GM056890
6 · The paper itself

Abstract

Sir1p is one of four SIR (silent information regulator) proteins required for silencing the cryptic mating-type locus HMRa in the budding yeast Saccharomyces cerevisiae. A Sir1p interaction with Orc1p, the largest subunit of the origin recognition complex (ORC), is critical for Sir1p's ability to bind HMRa and function in the formation of silent chromatin. Here we show that a discrete domain within Sir1p, the ORC interaction region (OIR), was necessary and sufficient for a Sir1p-ORC interaction. The OIR contains the originally defined silencer recognition-defective region as well as additional amino acids. In addition, a Sir1p-Sir4p interaction required a larger region of Sir1p that included the OIR. Amino acid substitutions causing defects in either a Sir1p-Orc1p or a Sir1p-Sir4p interaction reduced HMRa silencing and Sir1p binding to HMRa in chromatin. These data support a model in which Sir1p's association with HMRa is mediated by separable Sir1p-ORC and Sir1p-Sir4p interactions requiring a common Sir1p domain, and they indicate that a Sir1p-ORC interaction is restricted to silencers, at least in part, through interactions with Sir4p.

Indexed as

Amino Acid SequenceAmino Acid SubstitutionBinding SitesChromatinConserved SequenceDNA-Binding ProteinsFungal ProteinsGenes, FungalGene SilencingGenes, Mating Type, FungalModels, BiologicalMolecular Sequence DataOrigin Recognition ComplexProtein Structure, TertiarySaccharomyces cerevisiaeSequence Homology, Amino AcidChromatinDNA-Binding ProteinsFungal ProteinsOrigin Recognition ComplexSilent Information Regulator Proteins, Saccharomyces cerevisiaeSIR1 protein, S cerevisiaeSIR4 protein, S cerevisiae

Identifiers

PMID14701749
PMCPMC343803
OpenAlexW2123047350

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.