Evidence map›Paper›PMID 14698552›Full record

ArticleJournal of the American Society for Mass Spectrometry2004

Detection of specific noncovalent interaction of peptide with DNA by MALDI-TOF.

Shi-Zhong Luo, Yan-Mei Li, Wei Qiang, Yu-Fen Zhao, Hiroshi Abe, Tadashi Nemoto, Xu-Rong Qin, Hiroshi Nakanishi

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of the American Society for Mass Spectrometry, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Noncovalent complexes between DNA and basic polypeptides or polyamines by MALDI-TOF.Journal of the American Society for Mass Spectrometry · 2007
    Article
  3. Article
  4. Article
  5. Localization of noncovalent complexes in MALDI-preparations by CLSM.Journal of the American Society for Mass Spectrometry · 2006
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Shi-Zhong LuoThe Key Laboratory for Bioorganic Phosphorus Chemistry, Ministry of Education, Department of Chemistry, Tsinghua University, Beijing, China.
Yan-Mei Li
Wei Qiang
Yu-Fen Zhao
Hiroshi Abe
Tadashi Nemoto
Xu-Rong Qin
Hiroshi Nakanishi
National Institute of Advanced Industrial Science and Technology · JPTsinghua University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Matrix-assisted laser desorption/ionization (MALDI) mass spectrometry was used to obtain spectra of peptide-DNA complexes formed by basic domain (BD15) of c-Fos protein and DNA AP-1 site (5'-TGAGTCA-3'). The noncovalent interaction between single stranded DNA and BD15 was observed and confirmed to be an ionic one between the negatively charged sugar-phosphate backbone of DNA and positively charged side chains of Arg- and lys-rich peptides as demonstrated by Vertes and coworkers and Woods and coworkers. But the specific noncovalent interaction between DNA AP-1 site and the dimer of BD15 was firstly detected in this paper. Various different sequence DNAs were studied and it was found that this interaction is a sequence-specific one, and AP-1 site was essential for this interaction. This specific interaction depends on the matrix. It was only observed in the ATT matrix and not in the other two matrixes (CHCA and DHBA).

Indexed as

DNA, Single-StrandedOligodeoxyribonucleotidesPeptidesProto-Oncogene Proteins c-fosSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationTranscription Factor AP-1DNA, Single-StrandedOligodeoxyribonucleotidesPeptidesProto-Oncogene Proteins c-fosTranscription Factor AP-1

Identifiers

PMID14698552
OpenAlexW2044542960

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.