Evidence map›Paper›PMID 14697763›Full record

ReviewDNA repair2004

DNA-cytosine deaminases: from antibody maturation to antiviral defense.

Ashok S Bhagwat

Abstract readReview
In one paragraph

Review in DNA repair, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Transcriptional pausing and stalling causes multiple clustered mutations by human activation-induced deaminase.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2009
    Article
  8. Article
  9. Review
  10. Article
  11. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

1 author at 1 institution in 1 country.

Ashok S BhagwatDepartment of Chemistry, Wayne State University, 443 Chemistry Building, Detroit, MI 48202-3489, USA. axb@chem.wayne.edu
Wayne State University · US

Funding

TRANSCRIPTION--INDUCED MUTATIONSR01GM057200 · NIGMS · WAYNE STATE UNIVERSITY · PI BHAGWAT, ASHOK S · 1998 to 2014
$2.6M
Discovering New Human DNA Repair Genes by BioinformaticsR33CA097899 · NCI · WAYNE STATE UNIVERSITY · PI BHAGWAT, ASHOK S · 2006 to 2007
$491k
Discovering New Human DNA Repair Genes by BioinformaticsR21CA097899 · NCI · WAYNE STATE UNIVERSITY · PI BHAGWAT, ASHOK S · 2003 to 2004
$260k
NCI NIH HHS CA97899NCI NIH HHS R21 CA097899NCI NIH HHS R33 CA097899NIGMS NIH HHS GM57200NIGMS NIH HHS R01 GM057200
6 · The paper itself

Abstract

The deamination of cytosines in DNA to uracil, thought to be initiated by free water within the cells, is a well studied pathway by which C to T mutations occur. Until recently, this conversion was frequently referred to as being spontaneous because of the involvement of cellular water. The recent discovery of a family of enzymes in mammalian cells that catalyze this reaction was unexpected and has created excitement in at least two areas of biology, immunology and virology. One of these enzymes, activation-induced cytidine deaminase (AID), is required for the final steps in the maturation of antibodies. The key features of this process include the introduction of a wide variety of base substitutions in the immunoglobulin genes and the creation of region-specific double-strand breaks. Another member of this family, Apobec3G, is involved in the mutational inactivation and degradation of the human immunodeficiency virus (HIV-1). Among the many intriguing features of these processes is the likely involvement of the enzyme that is thought to "protect" cellular DNA against the accumulation of uracils, uracil-DNA glycosylase (UDG). It appears that in certain situations, the newly discovered DNA-cytosine deaminases can team up with UDG to extensively mutate and degrade DNA. This article discusses the many questions raised regarding the role of these enzymes in protecting cells against infections, and about their possible roles in genome evolution and carcinogenesis.

Indexed as

DNA DamageDNA RepairAICDA (Activation-Induced Cytidine Deaminase)Cytidine DeaminaseCytosineDeaminationDNADNA GlycosylasesHumansImmunoglobulin GUracilUracil-DNA GlycosidaseVirusesAICDA (Activation-Induced Cytidine Deaminase)Cytidine DeaminaseCytosineDNADNA GlycosylasesImmunoglobulin GUracilUracil-DNA Glycosidase

Identifiers

PMID14697763
PMCPMC4617312
OpenAlexW2081911669

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.