Evidence map›Paper›PMID 14695281›Full record

ArticleBiophysical journal2004

Phosphorylation-dependent changes in structure and dynamics in ERK2 detected by SDSL and EPR.

Andrew N Hoofnagle, James W Stoner, Thomas Lee, Sandra S Eaton, Natalie G Ahn

Abstract readComparative Study
In one paragraph

Article in Biophysical journal, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Phosphorylation releases constraints to domain motion in ERK2.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  5. Article
  6. Article
  7. Analysis of MAP kinases by hydrogen exchange mass spectrometry.Methods in molecular biology (Clifton, N.J.) · 2010
    Article
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Andrew N HoofnagleSchool of Medicine, University of Colorado Health Sciences Center, Denver, Colorado 80262, USA.
James W Stoner
Thomas Lee
Sandra S Eaton
Natalie G Ahn

Funding

GROWTH FACTOR REGULATION OF PROTEIN KINASE CASCADESR01GM048521 · NIGMS · UNIVERSITY OF COLORADO AT BOULDER · PI AHN, NATALIE G. · 1992 to 2005
$1.5M
INTERACTION OF SPIN LABELS WITH TRANSITION METALSR01GM021156 · NIGMS · UNIVERSITY OF DENVER · PI EATON, GARETH R · 1985 to 2002
$506k
NIGMS NIH HHS GM21156NIGMS NIH HHS GM48521NIGMS NIH HHS R01 GM048521
6 · The paper itself

Abstract

Mitogen-activated protein kinases are regulated by occupancy at two phosphorylation sites near the active site cleft. Previous studies using hydrogen exchange to investigate the canonical mitogen-activated protein kinase, extracellular signal-regulated protein kinase-2, have shown that phosphorylation alters backbone conformational mobility >10 A distal to the site of phosphorylation, including decreased mobility within amino acids 102-105 and increased mobility within 108-109. To further describe changes after enzyme activation, site-directed spin labeling at amino acids 101, 105-109, 111, 112 and electron paramagnetic resonance spectroscopy were used to investigate this region. The anisotropic hyperfine splitting of the spin labels in glassy samples was unchanged by phosphorylation, consistent with previous crystallographic studies that indicate no structural change in this region. At positions 101, 111, and 112, the mobility of the spin label was unchanged by diphosphorylation, consistent with little or no conformational change. However, diphosphorylation caused small but significant changes in rotational diffusion rates at positions 105-108 and altered proportions of probe in a motionally constrained state at positions 105, 107, and 109. Thus, electron paramagnetic resonance indicates reproducible changes in nanosecond side-chain mobilities at specific residues within the interdomain region, far from the site of phosphorylation and conformational change.

Indexed as

Amino Acid SubstitutionCysteineElectron Spin Resonance SpectroscopyEnzyme ActivationKineticsMitogen-Activated Protein Kinase 1Mutagenesis, Site-DirectedPhosphorylationProtein ConformationRecombinant ProteinsSpin LabelsStructure-Activity RelationshipCysteineMitogen-Activated Protein Kinase 1Recombinant ProteinsSpin Labels

Identifiers

PMID14695281
PMCPMC1303804

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.