Evidence map›Paper›PMID 14695259›Full record

ArticleBiophysical journal2004

The physiological properties of a novel family of VDAC-like proteins from Drosophila melanogaster.

Alexander G Komarov, Brett H Graham, William J Craigen, Marco Colombini

Open access · bronzeAbstract readComparative StudyEvaluation Study
In one paragraph

Article in Biophysical journal, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Developing a Novel and Optimized Yeast Model for Human VDAC Research.International journal of molecular sciences · 2024
    Article
  3. Mitochondrial Differentiation during Spermatogenesis: Lessons fromInternational journal of molecular sciences · 2024
    Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Frontiers in plant science · 2020
    Article
  9. Article
  10. Protonation state of glutamate 73 regulates the formation of a specific dimeric association of mVDAC1.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. VDAC closure increases calcium ion flux.Biochimica et biophysica acta · 2007
    Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Alexander G KomarovDepartment of Biology, University of Maryland, College Park, Maryland 20742, USA.
Brett H Graham
William J Craigen
Marco Colombini
Baylor College of Medicine · USUniversity of Maryland, College Park · US

Funding

The Role of Mitochondrial VDACs in ApoptosisR01NS042319 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI CRAIGEN, WILLIAM JAMES · 2001 to 2010
$1.9M
Drosophila VDAC's Role in Mitochondrial FunctionK08HD044808 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI GRAHAM, BRETT HARRISON · 2003 to 2007
$643k
The Role of Mitochondrial VDACs in Apoptosis.F32GM065041 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI GRAHAM, BRETT HARRISON · 2002 to 2003
$68k
NICHD NIH HHS K08 HD044808NIGMS NIH HHS 1F32GM065041NIGMS NIH HHS F32 GM065041NINDS NIH HHS R01 NS042319NINDS NIH HHS R01 NS42319PHS HHS R01 N5042319
6 · The paper itself

Abstract

VDAC, a major protein of the mitochondrial outer membrane, forms voltage-dependent, anion-selective channels permeable to most metabolites. Although multiple isoforms of VDAC have been found in different organisms, only one isoform (porin/DVDAC) has been previously reported for Drosophila melanogaster. We have examined the physiological properties of three other Drosophila proteins (CG17137, CG17139, and CG17140) whose primary sequences have significant homology to DVDAC. A comparison of their hydropathy profiles (beta-pattern) with known VDAC sequences indicates the same fundamental folding pattern but with major insertions and deletions. The ability of these proteins to form channels was tested on planar membranes and liposomes. Channel activity was observed with varying degrees of similarity to VDAC. Two of these proteins (CG17137 and CG17140) produced channels with anionic selectivity in the open state. Sometimes channels exhibited closure and voltage gating, but for CG17140 this occurred at much higher voltages than is typical for VDAC. CG17139 was not able to form channels. DVDAC and CG17137 were able to rescue the temperature-sensitive conditional-lethal phenotype of VDAC-deficient yeast, whereas CG17139 and CG17140 demonstrated no complementation. Similar structure and channel formation indicate that VDAC-like proteins are part of the larger VDAC family but the modifications are indicative of specialized functions.

Indexed as

Sequence Analysis, ProteinAmino Acid SequenceCell Membrane PermeabilityDrosophila ProteinsIon Channel GatingLiposomesMolecular Sequence DataPorinsProtein IsoformsSequence Homology, Amino AcidVoltage-Dependent Anion ChannelsDrosophila ProteinsLiposomesporin protein, DrosophilaPorinsProtein IsoformsVoltage-Dependent Anion Channels

Identifiers

PMID14695259
PMCPMC1303779
OpenAlexW2148814842

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.