Evidence map›Paper›PMID 14691540›Full record

ArticlePLoS biology2003

GAD2 on chromosome 10p12 is a candidate gene for human obesity.

Philippe Boutin, Christian Dina, Francis Vasseur, Séverine Dubois, Laetitia Corset, Karin Séron, Lynn Bekris, Janice Cabellon, Bernadette Neve, Valérie Vasseur-Delannoy and 5 more

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed, 1 pooled it
12.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 1 synthesis or guideline pooled it, 152 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Aging · 2019
    Article
  6. GAD65 Promoter Polymorphism rs2236418 Modulates Harm Avoidance in Women via Inhibition/Excitation Balance in the Rostral ACC.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2018
    Article
  7. Article
  8. Article
  9. Article
  10. The genetics of human obesity.Annals of the New York Academy of Sciences · 2013
    Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Eating disorders: the current status of molecular genetic research.European child & adolescent psychiatry · 2010
    Review
  17. Metabolic syndrome components in murine models.Endocrine, metabolic & immune disorders drug targets · 2010
    Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 4 countries.

Philippe BoutinInstitute of Biology-Centre National de la Recherche Scientifique, Pasteur Institute, Lille, France.
Christian Dina
Francis Vasseur
Séverine Dubois
Laetitia Corset
Karin Séron
Lynn Bekris
Janice Cabellon
Bernadette Neve
Valérie Vasseur-Delannoy
Mohamed Chikri
M Aline Charles
Karine Clement
Ake Lernmark
Philippe Froguel
Institut Pasteur de Lille · FRUniversity of Washington · USHammersmith Hospital · GBHôpital Paul-Brousse · FRInserm · FR

Funding

CONSORTIUM LINKAGE STUDIES OF TYPE 2 DIABETESU01DK058026 · NIDDK · UNIVERSITY OF CHICAGO · PI COX, NANCY J. · 1999 to 2004
$7.5M
PATHOGENESIS OF TYPE 1.5 DIABETES IN THE GENERAL POPULATIONP01DK053004 · NIDDK · UNIVERSITY OF WASHINGTON · PI HOOD, LEROY E · 1998 to 2007
$5.3M
ISLET CELL MEMBRANE ANTIBODIES IN DIABTESR01DK026190 · NIDDK · UNIVERSITY OF WASHINGTON · PI HAMPE, CHRISTIANE S · 1986 to 2016
$4.9M
Medical Research Council G0000477NIDDK NIH HHS DK26190NIDDK NIH HHS DK53004NIDDK NIH HHS DK 58026-04NIDDK NIH HHS P01 DK053004NIDDK NIH HHS R01 DK026190NIDDK NIH HHS U01 DK058026
6 · The paper itself

Abstract

The gene GAD2 encoding the glutamic acid decarboxylase enzyme (GAD65) is a positional candidate gene for obesity on Chromosome 10p11-12, a susceptibility locus for morbid obesity in four independent ethnic populations. GAD65 catalyzes the formation of gamma-aminobutyric acid (GABA), which interacts with neuropeptide Y in the paraventricular nucleus to contribute to stimulate food intake. A case-control study (575 morbidly obese and 646 control subjects) analyzing GAD2 variants identified both a protective haplotype, including the most frequent alleles of single nucleotide polymorphisms (SNPs) +61450 C>A and +83897 T>A (OR = 0.81, 95% CI [0.681-0.972], p = 0.0049) and an at-risk SNP (-243 A>G) for morbid obesity (OR = 1.3, 95% CI [1.053-1.585], p = 0.014). Furthermore, familial-based analyses confirmed the association with the obesity of SNP +61450 C>A and +83897 T>A haplotype (chi(2) = 7.637, p = 0.02). In the murine insulinoma cell line betaTC3, the G at-risk allele of SNP -243 A>G increased six times GAD2 promoter activity (p < 0.0001) and induced a 6-fold higher affinity for nuclear extracts. The -243 A>G SNP was associated with higher hunger scores (p = 0.007) and disinhibition scores (p = 0.028), as assessed by the Stunkard Three-Factor Eating Questionnaire. As GAD2 is highly expressed in pancreatic beta cells, we analyzed GAD65 antibody level as a marker of beta-cell activity and of insulin secretion. In the control group, -243 A>G, +61450 C>A, and +83897 T>A SNPs were associated with lower GAD65 autoantibody levels (p values of 0.003, 0.047, and 0.006, respectively). SNP +83897 T>A was associated with lower fasting insulin and insulin secretion, as assessed by the HOMA-B% homeostasis model of beta-cell function (p = 0.009 and 0.01, respectively). These data support the hypothesis of the orexigenic effect of GABA in humans and of a contribution of genes involved in GABA metabolism in the modulation of food intake and in the development of morbid obesity.

Indexed as

AdultAgedAllelesAutoantibodiesCase-Control StudiesCatalysisCell LineChromosome MappingChromosomes, Human, Pair 10EatingFamily HealthFeeding BehaviorFemalegamma-Aminobutyric AcidGenetic LinkageGenotypeAutoantibodiesgamma-Aminobutyric AcidGlutamate Decarboxylaseglutamate decarboxylase 2InsulinIsoenzymesLuciferasesNeuropeptide Y

Identifiers

PMID14691540
PMCPMC270019
OpenAlexW2029121047

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.