Evidence map›Paper›PMID 14688378›Full record

Trial reportJournal of immunology (Baltimore, Md. : 1950)2004

A novel mechanism of alternative promoter and splicing regulates the epitope generation of tumor antigen CML66-L.

Yan Yan, Leuyen Phan, Fan Yang, Moshe Talpaz, Yu Yang, Zeyu Xiong, Bernard Ng, Nikolai A Timchenko, Catherine J Wu, Jerome Ritz and 2 more

Abstract readClinical TrialComparative StudyRandomized Controlled Trial
In one paragraph

Trial report in Journal of immunology (Baltimore, Md. : 1950), 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
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  5. Review
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  13. High expression and frequently humoral immune response of melanoma-associated antigen D4 in glioma.International journal of clinical and experimental pathology · 2014
    Article
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  15. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Yan YanDepartment of Medicine, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA.
Leuyen Phan
Fan Yang
Moshe Talpaz
Yu Yang
Zeyu Xiong
Bernard Ng
Nikolai A Timchenko
Catherine J Wu
Jerome Ritz
Hong Wang
Xiao-Feng Yang

Funding

STEROID RECEPTORS SUPERFAMILY MEMBERS--THEIR ROLE IN PROSTATE CANCERP50CA058204 · NCI · BAYLOR COLLEGE OF MEDICINE · PI ITTMANN, MICHAEL M. · 1992 to 2007
$21.3M
THE SHH-GLI PATHWAY REGULATES PROSTATE GROWTHR01DK056238 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI BUSHMAN, WADE A · 1999 to 2010
$2.0M
Baylor College of Medicine Cancer CenterP20CA103698 · NCI · BAYLOR COLLEGE OF MEDICINE · PI OSBORNE, C KENT · 2003 to 2005
$1.2M
Survival of CD4+CD25+ Regulatory T CellsK08AI054514 · NIAID · TEMPLE UNIV OF THE COMMONWEALTH · PI YANG, XIAO-FENG · 2003 to 2007
$589k
NCI NIH HHS P20 CA 103698NCI NIH HHS P20 CA103698NCI NIH HHS P50 CA058204NCI NIH HHS P50 CA 58204NIAID NIH HHS K08 AI 054514NIAID NIH HHS K08 AI054514NIDDK NIH HHS P30 DK 56238NIDDK NIH HHS R01 DK056238
6 · The paper itself

Abstract

This report describes the difference in the epitope generation of two isoforms of self-tumor Ag CML66 and the regulation mechanism. We identified a new CML66 short isoform, termed CML66-S. The previously identified long CML66 is referred to as CML66-L. CML66-S shares the C terminus with CML66-L but has its unique N terminus. CML66-S is predominantly expressed in testis, but is also expressed in very low levels in tumor cells, whereas CML66-L is expressed in tumor cells and testis. Differential expression of CML66-L and CML66-S in tumor cells resulted from regulation at transcription, although alternative splicing also participated in the generation of the isoforms. In addition, Ab titers to a CML66-L peptide were significantly higher than that to CML66-S peptide in the sera from patients with tumors. Finally, the Abs to full-length CML66-L in the sera from patients with tumors were correlated with the Abs in the sera from these patients to CML66-L-38, which is a fusion protein with a CML66-L-specific N terminus. This suggests that the CML66-L isoform is mainly responsible for the epitope generation. Our studies have identified the alternative promoter in combination with alternative splicing as a novel mechanism for regulation of the epitope generation of a self-tumor Ag.

Indexed as

Alternative SplicingAmino Acid SequenceAnimalsAntigens, NeoplasmEpitopesHumansInterferon-alphaLeukemia, Myelogenous, Chronic, BCR-ABL PositiveMaleMiceMolecular Sequence DataPromoter Regions, GeneticProtein IsoformsTestisAntigens, NeoplasmEpitopesInterferon-alphaNUDCD1 protein, humanProtein Isoforms

Identifiers

PMID14688378
PMCPMC3901998

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.