Evidence map›Paper›PMID 14685267›Full record

ArticleThe EMBO journal2004

An episomal mammalian replicon: sequence-independent binding of the origin recognition complex.

Daniel Schaarschmidt, Jens Baltin, Isa M Stehle, Hans J Lipps, Rolf Knippers

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in The EMBO journal, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 142 citations in OpenAlex.

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  16. Article
  17. Replication landscape of the human genome.Nature communications · 2016
    Article
  18. Review
  19. Nanoparticle-based technologies for retinal gene therapy.European journal of pharmaceutics and biopharmaceutics : official journal of Arbeitsgemeinschaft fur Pharmazeutische Verfahrenstechnik e.V · 2015
    Review
  20. Review

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Daniel SchaarschmidtDepartment of Biology, Universität Konstanz, Konstanz, Germany. daniel.schaarschmidt@uni-konstanz.de
Jens Baltin
Isa M Stehle
Hans J Lipps
Rolf Knippers
University of Konstanz · DEWitten/Herdecke University · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

An extrachromosomally replicating plasmid was used to investigate the specificity by which the origin recognition complex (ORC) interacts with DNA sequences in mammalian cells in vivo. We first showed that the plasmid pEPI-1 replicates semiconservatively in a once-per-cell-cycle manner and is stably transmitted over many cell generations in culture without selection. Chromatin immunoprecipitations and quantitative polymerase chain reaction analysis revealed that, in G1-phase cells, Orc1 and Orc2, as well as Mcm3, another component of the prereplication complex, are bound to multiple sites on the plasmid. These binding sites are functional because they show the S-phase-dependent dissociation of Orc1 and Mcm3 known to be characteristic for prereplication complexes in mammalian cells. In addition, we identified replicative nascent strands and showed that they correspond to many plasmid DNA regions. This work has implications for current models of replication origins in mammalian systems. It indicates that specific DNA sequences are not required for the chromatin binding of ORC in vivo. The conclusion is that epigenetic mechanisms determine the sites where mammalian DNA replication is initiated.

Indexed as

PlasmidsRepliconAnimalsBase PairingBase SequenceCell Cycle ProteinsCHO CellsChromatinClone CellsCricetinaeCricetulusDNA-Binding ProteinsDNA, CircularHeLa CellsHumansMammalsCell Cycle ProteinsChromatinDNA-Binding ProteinsDNA, CircularMCM3 protein, humanMinichromosome Maintenance Complex Component 3Nuclear ProteinsORC1 protein, humanORC2 protein, humanOrigin Recognition Complex

Identifiers

PMID14685267
PMCPMC1271667
OpenAlexW1995425986

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.