ArticleNucleic acids research2004
Pathbase: a database of mutant mouse pathology.
Article in Nucleic acids research, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
25 citing papers in PubMed, 54 citations in OpenAlex.
- Bridging mouse and human anatomies; a knowledge-based approach to comparative anatomy for disease model phenotyping.Mammalian genome : official journal of the International Mammalian Genome Society · 2023Review
- PATHBIO: an international training program for precision mouse phenotyping.Mammalian genome : official journal of the International Mammalian Genome Society · 2020Article
- A Review of Current Standards and the Evolution of Histopathology Nomenclature for Laboratory Animals.ILAR journal · 2018Article
- Approaches to Investigating Complex Genetic Traits in a Large-Scale Inbred Mouse Aging Study.Veterinary pathology · 2016Article
- Genetic determinants of fibro-osseous lesions in aged inbred mice.Experimental and molecular pathology · 2016Article
- Skin Diseases in Laboratory Mice: Approaches to Drug Target Identification and Efficacy Screening.Methods in molecular biology (Clifton, N.J.) · 2016Article
- Finding mouse models of human lymphomas and leukemia's using the Jackson laboratory mouse tumor biology database.Experimental and molecular pathology · 2015Article
- Identifying mouse models for skin cancer using the Mouse Tumor Biology Database.Experimental dermatology · 2014Article
- Training pathologists in mouse pathology.Veterinary pathology · 2012Article
- The mouse-human anatomy ontology mapping project.Database : the journal of biological databases and curation · 2012Article
- A flexible, open, decentralized system for digital pathology networks.Studies in health technology and informatics · 2012Article
- The challenges of defining oral cancer: analysis of an ontological approach.Head and neck pathology · 2011Review
- Identification of fat4 and tsc22d1 as novel candidate genes for spontaneous pulmonary adenomas.Cancer research · 2011Article
- An ontology-based comparative anatomy information system.Artificial intelligence in medicine · 2011Article
- The mouse as a model for understanding chronic diseases of aging: the histopathologic basis of aging in inbred mice.Pathobiology of aging & age related diseases · 2011Article
- Pathbase and the MPATH ontology. Community resources for mouse histopathology.Veterinary pathology · 2010Article
- Towards the integration of mouse databases - definition and implementation of solutions to two use-cases in mouse functional genomics.BMC research notes · 2010Article
- Where's the mouse info?Veterinary pathology · 2009Article
- One medicine, one pathology, and the one health concept.Journal of the American Veterinary Medical Association · 2009Article
- Integrating mouse anatomy and pathology ontologies into a phenotyping database: tools for data capture and training.Mammalian genome : official journal of the International Mammalian Genome Society · 2008Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
20 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Pathbase is a database that stores images of the abnormal histology associated with spontaneous and induced mutations of both embryonic and adult mice including those produced by transgenesis, targeted mutagenesis and chemical mutagenesis. Images of normal mouse histology and strain-dependent background lesions are also available. The database and the images are publicly accessible (http://www.pathbase.net) and linked by anatomical site, gene and other identifiers to relevant databases; there are also facilities for public comment and record annotation. The database is structured around a novel ontology of mouse disorders (MPATH) and provides high-resolution downloadable images of normal and diseased tissues that are searchable through orthogonal ontologies for pathology, developmental stage, anatomy and gene attributes (GO terms), together with controlled vocabularies for type of genetic manipulation or mutation, genotype and free text annotation for mouse strain and additional attributes. The database is actively curated and data records assessed by pathologists in the Pathbase Consortium before publication. The database interface is designed to have optimal browser and platform compatibility and to interact directly with other web-based mouse genetic resources.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.