ArticleNucleic acids research2004
LIFEdb: a database for functional genomics experiments integrating information from external sources, and serving as a sample tracking system.
Article in Nucleic acids research, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed.
- A review from biological mapping to computation-based subcellular localization.Molecular therapy. Nucleic acids · 2023Review
- Article
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- Novel roles of Vmp1: inhibition metastasis and proliferation of hepatocellular carcinoma.Cancer science · 2012Article
- Intracellular localization of GASP/ECOP/VOPP1.Journal of molecular histology · 2010Article
- Automated production of recombinant human proteins as resource for proteome research.Proteome science · 2008Article
- Towards defining the nuclear proteome.Genome biology · 2008Article
- LOCATE: a mammalian protein subcellular localization database.Nucleic acids research · 2008Article
- ProtSweep, 2Dsweep and DomainSweep: protein analysis suite at DKFZ.Nucleic acids research · 2007Article
- Fast automated cell phenotype image classification.BMC bioinformatics · 2007Article
- CAFTAN: a tool for fast mapping, and quality assessment of cDNAs.BMC bioinformatics · 2006Article
- Crystal structure of Homo sapiens PTD012 reveals a zinc-containing hydrolase fold.Protein science : a publication of the Protein Society · 2006Article
- The systematic functional characterisation of Xq28 genes prioritises candidate disease genes.BMC genomics · 2006Article
- The LIFEdb database in 2006.Nucleic acids research · 2006Article
- LOCATE: a mouse protein subcellular localization database.Nucleic acids research · 2006Article
- Alternative pre-mRNA processing regulates cell-type specific expression of the IL4l1 and NUP62 genes.BMC biology · 2005Review
- Structural genomics of human proteins--target selection and generation of a public catalogue of expression clones.Microbial cell factories · 2005Article
- EAnnot: a genome annotation tool using experimental evidence.Genome research · 2004Article
- From ORFeome to biology: a functional genomics pipeline.Genome research · 2004Article
- Hidden localization motifs: naturally occurring peroxisomal targeting signals in non-peroxisomal proteins.Genome biology · 2004Article
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We have implemented LIFEdb (http://www.dkfz.de/LIFEdb) to link information regarding novel human full-length cDNAs generated and sequenced by the German cDNA Consortium with functional information on the encoded proteins produced in functional genomics and proteomics approaches. The database also serves as a sample-tracking system to manage the process from cDNA to experimental read-out and data interpretation. A web interface enables the scientific community to explore and visualize features of the annotated cDNAs and ORFs combined with experimental results, and thus helps to unravel new features of proteins with as yet unknown functions.
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