ArticleNucleic acids research2004
PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries.
Article in Nucleic acids research, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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Who cites it
25 citing papers in PubMed.
- A dominant missense variant within LMBR1 related to equine polydactyly.Communications biology · 2024Article
- Association Analysis ofGenes · 2024Article
- The Innovative Informatics Approaches of High-Throughput Technologies in Livestock: Spearheading the Sustainability and Resiliency of Agrigenomics Research.Life (Basel, Switzerland) · 2022Review
- Extracellular production of recombinantExperimental and therapeutic medicine · 2020Article
- The porcine translational research database: a manually curated, genomics and proteomics-based research resource.BMC genomics · 2017Article
- Genome-wide association study identifies candidate genes for piglet splay leg syndrome in different populations.BMC genetics · 2017Article
- Purification of Ovine Respiratory Complex I Results in a Highly Active and Stable Preparation.The Journal of biological chemistry · 2016Article
- Cloning and characterization of a ribosomal protein L23a gene from Small Tail Han sheep by screening of a cDNA expression library.Meta gene · 2014Article
- Differential gene expression in the endometrium on gestation day 12 provides insight into sow prolificacy.BMC genomics · 2013Article
- Large-scale sequencing based on full-length-enriched cDNA libraries in pigs: contribution to annotation of the pig genome draft sequence.BMC genomics · 2012Article
- Sequencing and characterization of the porcine α-galactosidase A gene: towards the generation of a porcine model for Fabry disease.Molecular biology reports · 2011Article
- Trans-species polymorphism and selection in the MHC class II DRA genes of domestic sheep.PloS one · 2010Article
- A study of alternative splicing in the pig.BMC research notes · 2010Article
- AID can restrict L1 retrotransposition suggesting a dual role in innate and adaptive immunity.Nucleic acids research · 2009Article
- The Pig Genome Database (PiGenome): an integrated database for pig genome research.Mammalian genome : official journal of the International Mammalian Genome Society · 2009Article
- A pig multi-tissue normalised cDNA library: large-scale sequencing, cluster analysis and 9K micro-array resource generation.BMC genomics · 2008Article
- Identification and characterization of an alternatively spliced variant of the MHC class I-related porcine neonatal Fc receptor for IgG.Developmental and comparative immunology · 2008Article
- LongSAGE analysis of skeletal muscle at three prenatal stages in Tongcheng and Landrace pigs.Genome biology · 2007Article
- PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences.Nucleic acids research · 2007Article
- PigGIS: Pig Genomic Informatics System.Nucleic acids research · 2007Article
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9 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We generated the PEDE (Pig EST Data Explorer; http://pede.dna.affrc.go.jp/) database using sequences assembled from porcine 5' ESTs from oligo-capped full-length cDNA libraries. Thus far we have performed EST analysis of various organs (thymus, spleen, uterus, lung, liver, ovary and peripheral blood mononuclear cells) and assembled 68,076 high-quality sequences into 5546 contigs and 28,461 singlets. PEDE provides a search interface for getting results of homology searches and enables users to obtain information on sequence data and cDNA clones of interest. Single-nucleotide polymorphisms detected through comparison of the EST sequences are classified by origin (western and oriental breeds) and are searchable in the database. This database system can accelerate analyses of livestock traits and yields information that can lead to new applications in pigs as model systems for medical research.
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