ArticleNucleic acids research2004
BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics.
Article in Nucleic acids research, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.
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61 citing papers in PubMed, 121 citations in OpenAlex.
- GrameneOryza: a comprehensive resource for Oryza genomes, genetic variation, and functional data.Database : the journal of biological databases and curation · 2025Article
- Thousands of trait-specific KASP markers designed for diverse breeding applications in rice (Oryza sativa).G3 (Bethesda, Md.) · 2025Article
- DNA methylation in transposable elements buffers the connection between three-dimensional chromatin organization and gene transcription upon rice genome duplication.Journal of advanced research · 2022Article
- A Comprehensive Gene Co-Expression Network Analysis Reveals a Role ofInternational journal of molecular sciences · 2022Article
- The Economic, Medical and Psychosocial Consequences of Whole Genome Sequencing for the Genetic Diagnosis of Patients With Intellectual Disability: The DEFIDIAG Study Protocol.Frontiers in genetics · 2022Article
- Genome-Wide Analysis Identified a Set of Conserved lncRNAs Associated with Domestication-Related Traits in Rice.International journal of molecular sciences · 2021Article
- Conserved Imprinted Genes between Intra-Subspecies and Inter-Subspecies Are Involved in Energy Metabolism and Seed Development in Rice.International journal of molecular sciences · 2020Article
- Article
- RiceRelativesGD: a genomic database of rice relatives for rice research.Database : the journal of biological databases and curation · 2019Article
- Comparative transcriptome analysis reveals molecular response to salinity stress of salt-tolerant and sensitive genotypes of indica rice at seedling stage.Scientific reports · 2018Article
- Accelerating public sector rice breeding with high-density KASP markers derived from whole genome sequencing ofMolecular breeding : new strategies in plant improvement · 2018Article
- Article
- RiceNet v2: an improved network prioritization server for rice genes.Nucleic acids research · 2015Article
- Profiling the expression domains of a rice-specific microRNA under stress.Frontiers in plant science · 2015Article
- Genome and metagenome sequencing: Using the human methyl-binding domain to partition genomic DNA derived from plant tissues.Applications in plant sciences · 2014Article
- Genetic analysis of ion-beam induced extremely late heading mutants in rice.Breeding science · 2014Article
- RiceWiki: a wiki-based database for community curation of rice genes.Nucleic acids research · 2014Article
- Gramene 2013: comparative plant genomics resources.Nucleic acids research · 2014Article
- STIFDB2: an updated version of plant stress-responsive transcription factor database with additional stress signals, stress-responsive transcription factor binding sites and stress-responsive genes in Arabidopsis and rice.Plant & cell physiology · 2013Article
- The Rice Genome Knowledgebase (RGKbase): an annotation database for rice comparative genomics and evolutionary biology.Nucleic acids research · 2013Article
1 more citing papers are in PubMed but not listed here.
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20 authors at 1 institution in 1 country.
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No grant is acknowledged in the PubMed record.
Abstract
Rice is a major food staple for the world's population and serves as a model species in cereal genome research. The Beijing Genomics Institute (BGI) has long been devoting itself to sequencing, information analysis and biological research of the rice and other crop genomes. In order to facilitate the application of the rice genomic information and to provide a foundation for functional and evolutionary studies of other important cereal crops, we implemented our Rice Information System (BGI-RIS), the most up-to-date integrated information resource as well as a workbench for comparative genomic analysis. In addition to comprehensive data from Oryza sativa L. ssp. indica sequenced by BGI, BGI-RIS also hosts carefully curated genome information from Oryza sativa L. ssp. japonica and EST sequences available from other cereal crops. In this resource, sequence contigs of indica (93-11) have been further assembled into Mbp-sized scaffolds and anchored onto the rice chromosomes referenced to physical/genetic markers, cDNAs and BAC-end sequences. We have annotated the rice genomes for gene content, repetitive elements, gene duplications (tandem and segmental) and single nucleotide polymorphisms between rice subspecies. Designed as a basic platform, BGI-RIS presents the sequenced genomes and related information in systematic and graphical ways for the convenience of in-depth comparative studies (http://rise.genomics.org.cn/).
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.