Evidence map›Paper›PMID 14681427›Full record

ArticleNucleic acids research2004

dictyBase: a new Dictyostelium discoideum genome database.

Lisa Kreppel, Petra Fey, Pascale Gaudet, Eric Just, Warren A Kibbe, Rex L Chisholm, Alan R Kimmel

Abstract read
In one paragraph

Article in Nucleic acids research, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed.

  1. Article
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  5. Article
  6. Article
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  9. Article
  10. Regulation of ribosomal protein genes: An ordered anarchy.Wiley interdisciplinary reviews. RNA · 2021
    Review
  11. Review
  12. Review
  13. Unusual Occurrence of Two Bona-Fide CCA-Adding Enzymes inInternational journal of molecular sciences · 2020
    Article
  14. Inorganic Polyphosphate Is Essential forFrontiers in cellular and infection microbiology · 2018
    Article
  15. Evaluating Different Virulence Traits ofFrontiers in cellular and infection microbiology · 2018
    Article
  16. Article
  17. Article
  18. Frontiers in microbiology · 2016
    Article
  19. Article
  20. An ancestral bacterial division system is widespread in eukaryotic mitochondria.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Lisa KreppelLaboratory of Cellular and Developmental Biology (50/3351), National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892-8028, USA.
Petra Fey
Pascale Gaudet
Eric Just
Warren A Kibbe
Rex L Chisholm
Alan R Kimmel

Funding

Development of DictyBase, an online informatics resourceR01GM064426 · NIGMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI CHISHOLM, REX L · 2002 to 2019
$8.3M
Regulation of Signaling Pathways that Organize DevelopmeZ01DK015503 · NIDDK · DIABETES, DIGESTIVE, KIDNEY DISEASES · PI KIMMEL, ALAN R · 1986 to 2006
–
NIGMS NIH HHS GM064426NIGMS NIH HHS R01 GM064426
6 · The paper itself

Abstract

Dictyostelium discoideum is a powerful and genetically tractable model system used for the study of numerous cellular molecular mechanisms including chemotaxis, phagocytosis and signal transduction. The past 2 years have seen a significant expansion in the scope and accessibility of online resources for Dictyostelium. Recent advances have focused on the development of a new comprehensive online resource called dictyBase (http://dictybase.org). This database not only provides access to genomic data including functional annotation of genes, gene products and chromosomal mapping, but also to extensive biological information such as mutant phenotypes and corresponding reference material. In conjunction with additional sites (http://genome. imb-jena.de/dictyostelium/, http://dictyensembl. bioch.bcm.tmc.edu and http://www.sanger.ac.uk/Projects/D_discoideum/) from the genome sequencing and assembly centers, these improvements have expanded the scope of the Dictyostelium databases making them accessible and useful to any researcher interested in comparative and functional genomics in metazoan organisms.

Indexed as

Databases, GeneticGenome, ProtozoanAnimalsComputational BiologyDictyosteliumGenomicsInternet

Identifiers

PMID14681427
PMCPMC308872

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.