ArticleNucleic acids research2004
coliBASE: an online database for Escherichia coli, Shigella and Salmonella comparative genomics.
Article in Nucleic acids research, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.
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Who cites it
37 citing papers in PubMed.
- SalmoNet, an integrated network of tenNPJ systems biology and applications · 2017Article
- A Highly Conserved Bacterial D-Serine Uptake System Links Host Metabolism and Virulence.PLoS pathogens · 2016Article
- Novel determinants of intestinal colonization of Salmonella enterica serotype typhimurium identified in bovine enteric infection.Infection and immunity · 2013Article
- Utilization of multiple "omics" studies in microbial pathogeny for microbiology insights.Asian Pacific journal of tropical biomedicine · 2013Review
- Modified intracellular-associated phenotypes in a recombinant Salmonella Typhi expressing S. Typhimurium SPI-3 sequences.PloS one · 2010Article
- Article
- PSAT: a web tool to compare genomic neighborhoods of multiple prokaryotic genomes.BMC bioinformatics · 2008Article
- Contribution of the SitABCD, MntH, and FeoB metal transporters to the virulence of avian pathogenic Escherichia coli O78 strain chi7122.Infection and immunity · 2008Article
- xBASE2: a comprehensive resource for comparative bacterial genomics.Nucleic acids research · 2008Article
- e-Fungi: a data resource for comparative analysis of fungal genomes.BMC genomics · 2007Article
- Global transcriptional response of Escherichia coli O157:H7 to growth transitions in glucose minimal medium.BMC microbiology · 2007Article
- Computer-aided identification of polymorphism sets diagnostic for groups of bacterial and viral genetic variants.BMC bioinformatics · 2007Article
- Re-annotation and re-analysis of the Campylobacter jejuni NCTC11168 genome sequence.BMC genomics · 2007Article
- Defining genomic islands and uropathogen-specific genes in uropathogenic Escherichia coli.Journal of bacteriology · 2007Article
- Characterization of Escherichia coli MG1655 grown in a low-shear modeled microgravity environment.BMC microbiology · 2007Article
- Autotransporter-encoding sequences are phylogenetically distributed among Escherichia coli clinical isolates and reference strains.Applied and environmental microbiology · 2007Article
- Salmonella typhimurium flhE, a conserved flagellar regulon gene required for swarming.Microbiology (Reading, England) · 2007Article
- The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium.Molecular microbiology · 2007Article
- Phylogenetic comparisons reveal multiple acquisitions of the toxin genes by enterotoxigenic Escherichia coli strains of different evolutionary lineages.Journal of clinical microbiology · 2006Article
- The Escherichia coli K-12 NarL and NarP proteins insulate the nrf promoter from the effects of integration host factor.Journal of bacteriology · 2006Article
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Authors and funding
3 authors.
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Abstract
We have constructed coliBASE, a database for Escherichia coli, Shigella and Salmonella comparative genomics available online at http://colibase. bham.ac.uk. Unlike other E.coli databases, which focus on the laboratory model strain K12, coliBASE is intended to reflect the full diversity of E.coli and its relatives. The database contains comparative data including whole genome alignments and lists of putative orthologous genes, together with numerous analytical tools and links to existing online resources. The data are stored in a relational database, accessible by a number of user-friendly search methods and graphical browsers. The database schema is generic and can easily be applied to other bacterial genomes. Two such databases, CampyDB (for the analysis of Campylobacter spp.) and ClostriDB (for Clostridium spp.) are also available at http://campy.bham.ac.uk and http://clostri. bham.ac.uk, respectively. An example of the power of E.coli comparative analyses such as those available through coliBASE is presented.
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