ArticleNucleic acids research2004
ASD: the Alternative Splicing Database.
Article in Nucleic acids research, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
80 citing papers in PubMed.
- GLTSCR1 coordinates alternative splicing and transcription elongation of ZO1 to regulate colorectal cancer progression.Journal of molecular cell biology · 2022Article
- Entailing the Next-Generation Sequencing and Metabolome for Sustainable Agriculture by Improving Plant Tolerance.International journal of molecular sciences · 2022Review
- ASpedia: a comprehensive encyclopedia of human alternative splicing.Nucleic acids research · 2018Article
- Global Plant Stress Signaling: Reactive Oxygen Species at the Cross-Road.Frontiers in plant science · 2016Review
- MIsoMine: a genome-scale high-resolution data portal of expression, function and networks at the splice isoform level in the mouse.Database : the journal of biological databases and curation · 2015Article
- A heroin addiction severity-associated intronic single nucleotide polymorphism modulates alternative pre-mRNA splicing of the μ opioid receptor gene OPRM1 via hnRNPH interactions.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2014Article
- Novel alternative splicing isoform biomarkers identification from high-throughput plasma proteomics profiling of breast cancer.BMC systems biology · 2013Article
- A retroelement modifies pre-mRNA splicing: the murine Glrb(spa) allele is a splicing signal polymorphism amplified by long interspersed nuclear element insertion.The Journal of biological chemistry · 2012Article
- TILLING: a shortcut in functional genomics.Journal of applied genetics · 2011Review
- PRPF mutations are associated with generalized defects in spliceosome formation and pre-mRNA splicing in patients with retinitis pigmentosa.Human molecular genetics · 2011Article
- Support vector machines-based identification of alternative splicing in Arabidopsis thaliana from whole-genome tiling arrays.BMC bioinformatics · 2011Article
- Identification of tumor-associated cassette exons in human cancer through EST-based computational prediction and experimental validation.Molecular cancer · 2010Article
- Sequence features involved in the mechanism of 3' splice junction wobbling.BMC molecular biology · 2010Article
- The organization of nucleosomes around splice sites.Nucleic acids research · 2010Article
- Competing upstream 5' splice sites enhance the rate of proximal splicing.Molecular and cellular biology · 2010Article
- Genome-wide analysis of alternative splicing in cow: implications in bovine as a model for human diseases.BMC genomics · 2009Article
- Extraction, integration and analysis of alternative splicing and protein structure distributed information.BMC bioinformatics · 2009Article
- Comprehensive splicing graph analysis of alternative splicing patterns in chicken, compared to human and mouse.BMC genomics · 2009Article
- Queuosine formation in eukaryotic tRNA occurs via a mitochondria-localized heteromeric transglycosylase.The Journal of biological chemistry · 2009Article
- At the crossroads of homoeostasis and disease: roles of the PACS proteins in membrane traffic and apoptosis.The Biochemical journal · 2009Review
20 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Alternative splicing is widespread in mammalian gene expression, and variant splice patterns are often specific to different stages of development, particular tissues or a disease state. There is a need to systematically collect data on alternatively spliced exons, introns and splice isoforms, and to annotate this data. The Alternative Splicing Database consortium has been addressing this need, and is committed to maintaining and developing a value-added database of alternative splice events, and of experimentally verified regulatory mechanisms that mediate splice variants. In this paper we present two of the products from this project: namely, a database of computationally delineated alternative splice events as seen in alignments of EST/cDNA sequences with genome sequences, and a database of alternatively spliced exons collected from literature. The reported splice events are from nine different organisms and are annotated for various biological features including expression states and cross-species conservation. The data are presented on our ASD web pages (http://www.ebi.ac.uk/asd).
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.