Evidence map›Paper›PMID 14681350›Full record

ArticleNucleic acids research2004

GenBank: update.

Dennis A Benson, Ilene Karsch-Mizrachi, David J Lipman, James Ostell, David L Wheeler

Abstract read
In one paragraph

Article in Nucleic acids research, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 220 papers.

0numbers the graph read from it
0cells of the map it votes in
220citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

220 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Molecular and Phenotypic Characterization ofAnimals : an open access journal from MDPI · 2025
    Article
  6. Article
  7. Article
  8. Molecular survey of Hepatozoon spp., piroplasmids, and onchocercids in wild birds from the Brazilian Pantanal.Revista brasileira de parasitologia veterinaria = Brazilian journal of veterinary parasitology : Orgao Oficial do Colegio Brasileiro de Parasitologia Veterinaria · 2025
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Molecular survey and phylogenetic analysis ofFrontiers in veterinary science · 2023
    Article
  20. Article

160 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Dennis A BensonNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Ilene Karsch-Mizrachi
David J Lipman
James Ostell
David L Wheeler

Funding

Comparative GenomicsZIALM000077 · NLM · NATIONAL LIBRARY OF MEDICINE · PI LIPMAN, DAVID J. · 2009 to 2017
$1.4M
WHOLE DATABASE AND WHOLE GENOME COMPARISON TOOLZ01LM000077 · NLM · NATIONAL LIBRARY OF MEDICINE · PI LIPMAN, DAVID J. · 1997 to 2008
$139k
NCBI Production Resource DevelopmentZ01LM000160 · NLM · NATIONAL LIBRARY OF MEDICINE · PI OSTELL, JAMES M · 2002 to 2006
–
6 · The paper itself

Abstract

GenBank is a comprehensive database that contains publicly available DNA sequences for more than 140 000 named organisms, obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects. Most submissions are made using the BankIt (web) or Sequin program and accession numbers are assigned by GenBank staff upon receipt. Daily data exchange with the EMBL Data Library in the UK and the DNA Data Bank of Japan helps ensure worldwide coverage. GenBank is accessible through NCBI's retrieval system, Entrez, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome mapping, protein structure and domain information, and the biomedical journal literature via PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bimonthly releases and daily updates of the GenBank database are available by FTP. To access GenBank and its related retrieval and analysis services, go to the NCBI home page at: http://www.ncbi.nlm.nih.gov.

Indexed as

Databases, Nucleic AcidAnimalsClassificationExpressed Sequence TagsGenomicsHumansInformation Storage and RetrievalInternetSequence Tagged SitesSoftware

Identifiers

PMID14681350
PMCPMC308779

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.