Evidence map›Paper›PMID 14681306›Full record

ArticleHuman molecular genetics2004

Aberrant interchromosomal exchanges are the predominant cause of the 22q11.2 deletion.

Sulagna C Saitta, Stacy E Harris, Ann P Gaeth, Deborah A Driscoll, Donna M McDonald-McGinn, Melissa K Maisenbacher, Jill M Yersak, Prabir K Chakraborty, April M Hacker, Elaine H Zackai and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed, 1 pooled it
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 1 synthesis or guideline pooled it, 146 citations in OpenAlex.

  1. Pooled it
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  7. Article
  8. Review
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  12. Review
  13. Review
  14. Lessons Learned from CNV Analysis of Major Birth Defects.International journal of molecular sciences · 2020
    Review
  15. Review
  16. Characteristics of velopharyngeal dysfunction in 22q11.2 deletion syndrome: a retrospective case-control study.Journal of otolaryngology - head & neck surgery = Le Journal d'oto-rhino-laryngologie et de chirurgie cervico-faciale · 2020
    Article
  17. Article
  18. Evaluation of loss of heterozygosity of chromosome 22q11.21 region in patients with congenital heart diseases.The Egyptian heart journal : (EHJ) : official bulletin of the Egyptian Society of Cardiology · 2018
    Article
  19. Article
  20. Article

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Sulagna C SaittaDivision of Human Genetics, The Children's Hospital of Philadelphia, University of Pennsylvania School of Medicine, Philadelphia, PA 19104, USA.
Stacy E Harris
Ann P Gaeth
Deborah A Driscoll
Donna M McDonald-McGinn
Melissa K Maisenbacher
Jill M Yersak
Prabir K Chakraborty
April M Hacker
Elaine H Zackai
Terry Ashley
Beverly S Emanuel
Children's Hospital of Philadelphia · USYale University · USUniformed Services University of the Health Sciences · US

Funding

ZIDOVUDINE VS 2',3'DIDEHYDRO-3'DEOXYTHYMIDINE IN CHILDRENM01RR000240 · NCRR · CHILDREN'S HOSP OF PHILADELPHIA · PI ALTSCHULER, STEVEN M · 1985 to 2006
$15.3M
VELOCARDIOFACIAL SYNDROME--MOLECULAR &CLINICAL STUDIESP01DC002027 · NIDCD · CHILDREN'S HOSPITAL OF PHILADELPHIA · PI EMANUEL, BEVERLY S · 1994 to 2003
$6.4M
CYTOGENETIC AND MOLECULAR STUDIES OF HUMAN CHROMOSOME 22R01CA039926 · NCI · CHILDREN'S HOSP OF PHILADELPHIA · PI EMANUEL, BEVERLY S · 1985 to 2013
$4.0M
MALE STERILITY AND MEIOTIC CHECKPOINTR01HD039384 · NICHD · YALE UNIVERSITY · PI ASHLEY, TERRY · 2000 to 2004
$1.5M
MOLECULAR APPROACHES TO PEDIATRIC SCIENCE - CHRCP30HD028815 · NICHD · CHILDREN'S HOSPITAL OF PHILADELPHIA · PI SURREY, SAUL · 1992 to 2002
$1.0M
MOLECULAR MECHANISM OF CARDIAC OUTFLOW TRACT DEVELOPMENTK08HL004487 · NHLBI · CHILDRENS HOSPITAL OF PHILADELPHIA · PI SAITTA, SULAGNA C · 2001 to 2005
$651k
NCI NIH HHS R01 CA039926NCI NIH HHS R01-CA39926NCRR NIH HHS M01 RR000240NHLBI NIH HHS K08 HL004487NHLBI NIH HHS K08-HL04487NICHD NIH HHS P30-HD28815NICHD NIH HHS R01 HD039384NICHD NIH HHS R01-HD39384NIDCD NIH HHS P01 DC002027NIDCD NIH HHS P01-DC02027
6 · The paper itself

Abstract

Chromosome 22q11.2 deletions are found in almost 90% of patients with DiGeorge/velocardiofacial syndrome (DGS/VCFS). Large, chromosome-specific low copy repeats (LCRs), flanking and within the deletion interval, are presumed to lead to misalignment and aberrant recombination in meiosis resulting in this frequent microdeletion syndrome. We traced the grandparental origin of regions flanking de novo 3 Mb deletions in 20 informative three-generation families. Haplotype reconstruction showed an unexpectedly high number of proximal interchromosomal exchanges between homologs, occurring in 19/20 families. Instead, the normal chromosome 22 in these probands showed interchromosomal exchanges in 2/15 informative meioses, a rate consistent with the genetic distance. Meiotic exchanges, visualized as MLH1 foci, localize to the distal long arm of chromosome 22 in 75% of human spermatocytes tested, also reflecting the genetic map. Additionally, we found no effect of proband gender or parental age on the crossover frequency. Parental origin studies in 65 de novo 3 Mb deletions (including these 20 patients) demonstrated no bias. Unlike Williams syndrome, we found no chromosomal inversions flanked by LCRs in 22 sets of parents of 22q11 deleted patients, or in eight non-deleted patients with a DGS/VCFS phenotype using FISH. Our data are consistent with significant aberrant interchromosomal exchange events during meiosis I in the proximal region of the affected chromosome 22 as the likely etiology for the deletion. This type of exchange occurs more often than is described for deletions of chromosomes 7q11, 15q11, 17p11 and 17q11, implying a difference in the meiotic behavior of chromosome 22.

Indexed as

Chromosome AberrationsGene RearrangementChromosome MappingChromosomes, HumanChromosomes, Human, Pair 22DiGeorge SyndromeHaplotypesHumansIn Situ Hybridization, FluorescenceMaleMeiosisSpermatocytes

Identifiers

PMID14681306
PMCPMC2836129
OpenAlexW2144460548

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.