ArticleBMC bioinformatics2003
AnaBench: a Web/CORBA-based workbench for biomolecular sequence analysis.
Article in BMC bioinformatics, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
11 citing papers in PubMed.
- Dynamic integration of biological data sources using the data concierge.Health information science and systems · 2013Article
- Sawyeria marylandensis (Heterolobosea) has a hydrogenosome with novel metabolic properties.Eukaryotic cell · 2010Article
- MOWServ: a web client for integration of bioinformatic resources.Nucleic acids research · 2010Article
- iTools: a framework for classification, categorization and integration of computational biology resources.PloS one · 2008Article
- 'Unite and conquer': enhanced prediction of protein subcellular localization by integrating multiple specialized tools.BMC bioinformatics · 2007Article
- Tracing the evolution of the light-harvesting antennae in chlorophyll a/b-containing organisms.Plant physiology · 2007Article
- Bioclipse: an open source workbench for chemo- and bioinformatics.BMC bioinformatics · 2007Article
- TBestDB: a taxonomically broad database of expressed sequence tags (ESTs).Nucleic acids research · 2007Article
- The MPI Bioinformatics Toolkit for protein sequence analysis.Nucleic acids research · 2006Article
- Automating genomic data mining via a sequence-based matrix format and associative rule set.BMC bioinformatics · 2005Article
- PAT: a protein analysis toolkit for integrated biocomputing on the web.Nucleic acids research · 2005Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundSequence data analyses such as gene identification, structure modeling or phylogenetic tree inference involve a variety of bioinformatics software tools. Due to the heterogeneity of bioinformatics tools in usage and data requirements, scientists spend much effort on technical issues including data format, storage and management of input and output, and memorization of numerous parameters and multi-step analysis procedures.
resultsIn this paper, we present the design and implementation of AnaBench, an interactive, Web-based bioinformatics Analysis workBench allowing streamlined data analysis. Our philosophy was to minimize the technical effort not only for the scientist who uses this environment to analyze data, but also for the administrator who manages and maintains the workbench. With new bioinformatics tools published daily, AnaBench permits easy incorporation of additional tools. This flexibility is achieved by employing a three-tier distributed architecture and recent technologies including CORBA middleware, Java, JDBC, and JSP. A CORBA server permits transparent access to a workbench management database, which stores information about the users, their data, as well as the description of all bioinformatics applications that can be launched from the workbench.
conclusionAnaBench is an efficient and intuitive interactive bioinformatics environment, which offers scientists application-driven, data-driven and protocol-driven analysis approaches. The prototype of AnaBench, managed by a team at the Université de Montréal, is accessible on-line at: http://malawimonas.bcm.umontreal.ca:8091/anabench. Please contact the authors for details about setting up a local-network AnaBench site elsewhere.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.