Evidence map›Paper›PMID 14668432›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2003

Electron tomography analysis of envelope glycoprotein trimers on HIV and simian immunodeficiency virus virions.

Ping Zhu, Elena Chertova, Julian Bess, Jeffrey D Lifson, Larry O Arthur, Jun Liu, Kenneth A Taylor, Kenneth H Roux

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 246 papers.

0numbers the graph read from it
0cells of the map it votes in
246citing papers in PubMed
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

246 citing papers in PubMed, 417 citations in OpenAlex.

  1. Trial
  2. HLA-B*14:02-Restricted Env-Specific CD8Journal of virology · 2017
    Trial
  3. Article
  4. Review
  5. Article
  6. Article
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  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Activation of CXCR3Journal of virology · 2025
    Article
  17. Review
  18. Article
  19. Article
  20. Article

186 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Ping ZhuDepartment of Biological Science and Institute of Molecular Biophysics, Florida State University, Tallahassee, FL 32306, USA.
Elena Chertova
Julian Bess
Jeffrey D Lifson
Larry O Arthur
Jun Liu
Kenneth A Taylor
Kenneth H Roux
Florida State University · USNational Cancer Institute · USScience Applications International Corporation (United States) · US

Funding

EM STUDIES ON MUSCLER01GM030598 · NIGMS · FLORIDA STATE UNIVERSITY · PI TAYLOR, KENNETH ALLEN · 1985 to 2020
$4.9M
HIV and SIV Envelope GlycoproteinsR01AI055461 · NIAID · FLORIDA STATE UNIVERSITY · PI ROUX, KENNETH H · 2003 to 2011
$2.8M
ELECTRON MICROSCOPIC ANALYSIS OF GP120/GP160R21AI044291 · NIAID · FLORIDA STATE UNIVERSITY · PI ROUX, KENNETH H · 1998 to 1999
–
NIAID NIH HHS R01 AI 055461NIAID NIH HHS R01 AI055461NIAID NIH HHS R21 AI44291NIGMS NIH HHS GM 30598NIGMS NIH HHS R01 GM030598PHS HHS N01-C0-124000
6 · The paper itself

Abstract

We used electron tomography to directly visualize trilobed presumptive envelope (env) glycoprotein structures on the surface of negatively stained HIV type 1 (HIV-1) and simian immunodeficiency virus (SIV) virions. Wild-type HIV-1 and SIV virions had an average of 8-10 trimers per virion, consistent with predictions based on biochemical evidence. Mutant SIVs, biochemically demonstrated to contain high levels of the viral env proteins, averaged 70-79 trimers per virion in tomograms. These correlations strongly indicate that the visualized trimers represent env spikes. The env trimers were without obvious geometric distribution pattern or preferred rotational orientation. Combined with biochemical analysis of gag/env ratios in virions, these trimer counts allow calculation of the number of gag molecules per virion, yielding an average value of approximately 1400. Virion and env dimensions were also determined. Image-averaging analysis of SIV env trimers revealed a distinct chirality and strong concordance with recent molecular models. The results directly demonstrate the presence of env trimers on the surface of AIDS virus virions, albeit at numbers much lower than generally appreciated, and have important implications for understanding virion formation, virus interactions with host cells, and virus neutralization.

Indexed as

AIDS VaccinesGene Products, envHIVImage Processing, Computer-AssistedSimian Immunodeficiency VirusTomography, X-Ray ComputedVirionAIDS VaccinesGene Products, env

Identifiers

PMID14668432
PMCPMC307650
OpenAlexW2095678514

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.