ArticleGenetics2003
A consensus linkage map for sugi (Cryptomeria japonica) from two pedigrees, based on microsatellites and expressed sequence tags.
Article in Genetics, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
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Who cites it
27 citing papers in PubMed.
- Climate sensitivity of Cryptomeria japonica in two contrasting environments: Perspectives from QTL mapping.PloS one · 2020Article
- Article
- Genetic differentiation and evolutionary adaptation in Cryptomeria japonica.G3 (Bethesda, Md.) · 2014Article
- The first genetic linkage map of Eucommia ulmoides.Journal of genetics · 2014Article
- The use of SNP markers for linkage mapping in diploid and tetraploid peanuts.G3 (Bethesda, Md.) · 2014Article
- Transmission ratio distortion of molecular markers in a doubled haploid population originated from a natural hybrid between Osmunda japonica and O. lancea.Journal of plant research · 2013Article
- Genome scanning for detecting adaptive genes along environmental gradients in the Japanese conifer, Cryptomeria japonica.Heredity · 2012Article
- Annotated genetic linkage maps of Pinus pinaster Ait. from a Central Spain population using microsatellite and gene based markers.BMC genomics · 2012Article
- A second generation framework for the analysis of microsatellites in expressed sequence tags and the development of EST-SSR markers for a conifer, Cryptomeria japonica.BMC genomics · 2012Article
- Article
- High-throughput SNP genotyping in Cucurbita pepo for map construction and quantitative trait loci mapping.BMC genomics · 2012Article
- Characterization of the genome of bald cypress.BMC genomics · 2011Article
- Genic microsatellite markers in Brassica rapa: development, characterization, mapping, and their utility in other cultivated and wild Brassica relatives.DNA research : an international journal for rapid publication of reports on genes and genomes · 2011Article
- Construction of a high-density composite map and comparative mapping of segregation distortion regions in barley.Molecular genetics and genomics : MGG · 2010Article
- Development of a SNP resource and a genetic linkage map for Atlantic cod (Gadus morhua).BMC genomics · 2010Article
- An efficient method for developing SNP markers based on EST data combined with high resolution melting (HRM) analysis.BMC research notes · 2010Article
- Article
- Microsatellites for the genus Cucurbita and an SSR-based genetic linkage map of Cucurbita pepo L.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2008Article
- Article
- Genome scan to detect genetic structure and adaptive genes of natural populations of Cryptomeria japonica.Genetics · 2007Article
Corrections and comments
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Authors and funding
11 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
A consensus map for sugi (Cryptomeria japonica) was constructed by integrating linkage data from two unrelated third-generation pedigrees, one derived from a full-sib cross and the other by self-pollination of F1 individuals. The progeny segregation data of the first pedigree were derived from cleaved amplified polymorphic sequences, microsatellites, restriction fragment length polymorphisms, and single nucleotide polymorphisms. The data of the second pedigree were derived from cleaved amplified polymorphic sequences, isozyme markers, morphological traits, random amplified polymorphic DNA markers, and restriction fragment length polymorphisms. Linkage analyses were done for the first pedigree with JoinMap 3.0, using its parameter set for progeny derived by cross-pollination, and for the second pedigree with the parameter set for progeny derived from selfing of F1 individuals. The 11 chromosomes of C. japonica are represented in the consensus map. A total of 438 markers were assigned to 11 large linkage groups, 1 small linkage group, and 1 nonintegrated linkage group from the second pedigree; their total length was 1372.2 cM. On average, the consensus map showed 1 marker every 3.0 cM. PCR-based codominant DNA markers such as cleaved amplified polymorphic sequences and microsatellite markers were distributed in all linkage groups and occupied about half of mapped loci. These markers are very useful for integration of different linkage maps, QTL mapping, and comparative mapping for evolutional study, especially for species with a large genome size such as conifers.
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