Evidence map›Paper›PMID 14662965›Full record

ArticleJournal of clinical microbiology2003

Multilocus sequence typing of Candida glabrata reveals geographically enriched clades.

Andrew R Dodgson, Claude Pujol, David W Denning, David R Soll, Andrew J Fox

Abstract read
In one paragraph

Article in Journal of clinical microbiology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 105 papers.

0numbers the graph read from it
0cells of the map it votes in
105citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

105 citing papers in PubMed.

  1. Article
  2. Article
  3. Multilocus sequence typing ofOne health (Amsterdam, Netherlands) · 2025
    Article
  4. Molecular epidemiology ofVirulence · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. International journal of molecular sciences · 2025
    Article
  10. Clinical Isolate ofOpen journal of medical microbiology · 2025
    Article
  11. Candida krusei (Pichia kudriavzevii) multilocus sequence typing and antifungal susceptibility profile in Cameroon.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2025
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Antifungal susceptibility, molecular epidemiology, and clinical risk factors ofFrontiers in cellular and infection microbiology · 2024
    Article
  18. Article
  19. Article
  20. Clonal Diversity ofJournal of fungi (Basel, Switzerland) · 2023
    Article

45 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Andrew R DodgsonSchool of Medicine, University of Manchester, Manchester, United Kingdom.
Claude Pujol
David W Denning
David R Soll
Andrew J Fox

Funding

SWITCHING IN THE ORAL COMMENSAL CANDIDA GLABRATAR01DE014219 · NIDCR · UNIVERSITY OF IOWA · PI SOLL, DAVID R. · 2002 to 2006
$1.4M
NIDCR NIH HHS DE014219NIDCR NIH HHS R01 DE014219Wellcome Trust
6 · The paper itself

Abstract

The haploid pathogenic yeast Candida glabrata is the second most common Candida species isolated from cases of bloodstream infection. The clinical relevance of C. glabrata is enhanced by its reduced susceptibility to fluconazole. Despite this, little is known of the epidemiology or population structure of this species. We developed a multilocus sequence typing (MLST) scheme for C. glabrata and used it to fingerprint a geographically diverse collection of 107 clinical isolates and 2 reference strains. Appropriate loci were identified by amplifying and sequencing fragments of the coding regions of 11 C. glabrata genes in 10 unrelated isolates. The 6 most variable loci (FKS, LEU2, NMT1, TRP1, UGP1, and URA3) were sequenced in the collection of 109 isolates. From the 3,345 bp sequenced in each isolate, 81 nucleotide sites were found to be variable. These defined 30 STs among the 109 strains. The technique was validated by comparison with random amplified polymorphic DNA and the complex DNA fingerprinting probes Cg6 and Cg12. MLST identified 5 major clades among the isolates studied. Three of the clades exhibited significant geographical bias. Our data demonstrate for the first time, with such a large geographically diverse strain collection, that distinct genetic clades of C. glabrata prevail in different geographical regions.

Indexed as

Antifungal AgentsBase SequenceCandida glabrataDNA PrimersDrug Resistance, MicrobialFluconazoleGeographyHumansMolecular Sequence DataPhylogenySequence AlignmentSequence Homology, Nucleic AcidSerotypingAntifungal AgentsDNA PrimersFluconazole

Identifiers

PMID14662965
PMCPMC309006

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.