Evidence map›Paper›PMID 14652759›Full record

ArticlePlanta2004

Subcellular localization and topology of beta(1-->4)galactosyltransferase that elongates beta(1-->4)galactan side chains in rhamnogalacturonan I in potato.

Naomi Geshi, Bodil Jørgensen, Peter Ulvskov

Abstract read
PubMed Publisher
In one paragraph

Article in Planta, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.6field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Biosynthesis of pectin.Plant physiology · 2010
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Naomi GeshiBiotechnology Group, Danish Institute of Agricultural Sciences, Thorvaldsensvej 40. 8. 2., 1871, Frederiksberg C, Copenhagen, Denmark. n.geshi@dias.kvl.dk
Bodil Jørgensen
Peter Ulvskov
Instituto de Ciencias Agrarias · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The subcellular localization and topology of rhamnogalacturonan I (RG-I) beta(1-->4)galactosyltransferase(s) (beta[1-->4]GalTs) from potato ( Solanum tuberosum L.) were investigated. Using two-step discontinuous sucrose step gradients, galactosyltransferase (GalT) activity that synthesized 70%-methanol-insoluble products from UDP-[(14)C]Gal was detected in both the 0.5 M sucrose fraction and the 0.25/1.1 M sucrose interface. The former fraction contained mainly soluble proteins and the latter was enriched in Golgi vesicles that contained most of the UDPase activity, a Golgi marker. By gel-filtration analysis, products of 180-2000 Da were found in the soluble fraction, whereas in the Golgi-enriched fraction the products were larger than 80 kDa and could be digested with rhamnogalacturonan lyase and beta(1,4) endogalactanase to yield smaller rhamnogalacturonan oligomers, galactobiose and galactose. The endogalactanase requires beta(1-->4)galactans with at least three galactosyl residues for cleavage, indicating that the enzyme(s) present in the 0.25/1.1 M Suc interface transferred one or more galactosyl residues to pre-existing beta(1-->4)galactans producing RG-I side chains in total longer than a trimer. Thus, the beta(1-->4)GalT activity that elongates beta(1-->4)-linked galactan on RG-I was located in the Golgi apparatus. This beta(1-->4)GalT activity was not reduced after treatment of the Golgi vesicles with proteinase, but approximately 75% of the activity was lost after treatment with proteinase in the presence of Triton X-100. In addition, the beta(1-->4)GalT activity was recovered in the detergent phase after treatment of Golgi vesicles with Triton X-114. Taken together, these observations supported the view that the RG-I beta(1-->4)GalT that elongates beta(1-->4)galactan was mainly located in the Golgi apparatus and integrated into the membrane with its catalytic site facing the lumen.

Indexed as

Blotting, WesternDetergentsEndopeptidase KGalactansGolgi ApparatusN-Acetyllactosamine SynthaseOctoxynolPectinsPolyethylene GlycolsPyrophosphatasesSolanum tuberosumSucrose1,4-beta-galactanDetergentsEndopeptidase KGalactansN-Acetyllactosamine SynthaseNonidet P-40OctoxynolPectinsPolyethylene GlycolsPyrophosphatasesrhamnogalacturonan ISucroseuridine diphosphatase

Identifiers

PMID14652759
OpenAlexW1982873989

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.