Evidence map›Paper›PMID 14651639›Full record

ArticleMolecular microbiology2003

Distribution of split DnaE inteins in cyanobacteria.

Jonathan Caspi, Gil Amitai, Olga Belenkiy, Shmuel Pietrokovski

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
1.3field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 70 citations in OpenAlex.

  1. Article
  2. Review
  3. Characterization of NiCas12b for In Vivo Genome Editing.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Inteins as Drug Targets and Therapeutic Tools.Frontiers in molecular biosciences · 2022
    Review
  9. Article
  10. Article
  11. A mesophilic cysteine-less split intein for proteinProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  12. Review
  13. Biotechnological Applications of Protein Splicing.Current protein & peptide science · 2019
    Review
  14. Genomic Characteristics ofFrontiers in microbiology · 2019
    Article
  15. Review
  16. A promiscuous split intein with expanded protein engineering applications.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  17. Review
  18. Nature's recipe for splitting inteins.Protein engineering, design & selection : PEDS · 2014
    Review
  19. Protein splicing: how inteins escape from precursor proteins.The Journal of biological chemistry · 2014
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Jonathan CaspiMolecular Genetics Department, The Weizmann Institute of Science, Rehovot 76100, Israel.
Gil Amitai
Olga Belenkiy
Shmuel Pietrokovski
Weizmann Institute of Science · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Inteins are genetic elements found inside the coding regions of different host proteins and are translated in frame with them. The intein-encoded protein region is removed by an autocatalytic protein-splicing reaction that ligates the host protein flanks with a peptide bond. This reaction can also occur in trans with the intein and host protein split in two. After translation of the two genes, the two intein parts ligate their flanking protein parts to each other, producing the mature protein. Naturally split inteins are only known in the DNA polymerase III alpha subunit (polC or dnaE gene) of a few cyanobacteria. Analysing the phylogenetic distribution and probable genetic propagation mode of these split inteins, we conclude that they are genetically fixed in several large cyanobacterial lineages. To test our hypothesis, we sequenced parts of the dnaE genes from five diverse cyanobacteria and found all species to have the same type of split intein. Our results suggest the occurrence of a genetic rearrangement in the ancestor of a large division of cyanobacteria. This event fixed the dnaE gene in a unique two-genes one-protein configuration in the progenitor of many cyanobacteria. Our hypothesis, findings and the cloning procedure that we established allow the identification and acquisition of many naturally split inteins. Having a large and diverse repertoire of these unique inteins will enable studies of their distinct activity and enhance their use in biotechnology.

Indexed as

Protein SplicingAmino Acid SequenceBacterial ProteinsCyanobacteriaDNA Polymerase IIIMolecular Sequence DataPhylogenySequence Analysis, DNABacterial ProteinsDNA Polymerase IIIDNA polymerase III, alpha subunit

Identifiers

PMID14651639
PMCPMC7168405
OpenAlexW1504251114

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.