Evidence map›Paper›PMID 14648202›Full record

ArticleMolecular genetics and genomics : MGG2004

Comparative mapping reveals partial conservation of synteny at the apomixis locus in Paspalum spp.

F Pupilli, E J Martinez, A Busti, O Calderini, C L Quarin, S Arcioni

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Molecular genetics and genomics : MGG, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 78 citations in OpenAlex.

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  14. A High-Density Linkage Map of the Forage GrassFrontiers in plant science · 2019
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  15. A Plant-SpecificFrontiers in plant science · 2019
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  16. Reproductive Systems inFrontiers in plant science · 2019
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

F PupilliInstitute of Plant Genetics, CNR Research Division of Perugia, Via della Madonna Alta 130, 06128 Perugia, Italy. fulvio.pupilli@igv.cnr.it
E J Martinez
A Busti
O Calderini
C L Quarin
S Arcioni
National University of the Northeast · ARResearch Institute for Geo-Hydrological Protection · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In plants, gametophytic apomixis is a form of asexual reproduction that leads to the formation of seed-derived offspring that are genetically identical to the mother plant. A common set of RFLP markers, including five rice anchor markers previously shown to be linked to apomixis in Paspalum simplex, were used to detect linkage with apomixis in P. notatum and P. malacophyllum. A comparative map of the region around the apomixis locus was constructed for the three Paspalum species, and compared to the rice map. The locus that controls apomixis in P. simplex was almost completely conserved in the closely related species P. malacophyllum, whereas it was only partially represented in the distantly related species P. notatum. Although strong synteny of markers was noted between this locus and a portion of rice chromosome 12 in both P. simplex and P. malacophyllum, the same locus in P. notatum was localized to a hybrid chromosome which carries markers that map to rice chromosomes 2 and 12. All three Paspalum species showed recombination suppression at the apomixis locus; in the case of P. notatum, this might be due to a heterozygosity for a translocation that most probably negatively interferes with chromosomal pairing near the locus. A common set of markers that show linkage with apomixis in all three Paspalum species define a portion of the apomixis-controlling locus that is likely to contain genes critical for apomictic reproduction.

Indexed as

Genes, PlantChromosome MappingConserved SequenceDNA, PlantGenetic MarkersGenome, PlantOryzaPaspalumSeedsSpecies SpecificityDNA, PlantGenetic Markers

Identifiers

PMID14648202
OpenAlexW2156444806

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.