Evidence map›Paper›PMID 14647440›Full record

ArticleOncogene2003

Silencing effect of CpG island hypermethylation and histone modifications on O6-methylguanine-DNA methyltransferase (MGMT) gene expression in human cancer.

Tetsuji Nakagawachi, Hidenobu Soejima, Takeshi Urano, Wei Zhao, Ken Higashimoto, Yuji Satoh, Shiroh Matsukura, Shinichi Kudo, Yoshihiko Kitajima, Haruhito Harada and 7 more

Abstract read
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In one paragraph

Article in Oncogene, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 93 papers.

0numbers the graph read from it
0cells of the map it votes in
93citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

93 citing papers in PubMed, 182 citations in OpenAlex.

  1. Trial
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  9. Genetic and epigenetic landscape of OExploration of targeted anti-tumor therapy · 2025
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  17. ITGB3BP is a potential biomarker associated with poor prognosis of glioma.Journal of cellular and molecular medicine · 2022
    Article
  18. Article
  19. Review
  20. Article

33 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 1 country.

Tetsuji NakagawachiDivision of Molecular Biology and Genetics, Department of Biomolecular Sciences, Saga Medical School, 5-1-1 Nabeshima, Saga 849-8501, Japan.
Hidenobu Soejima
Takeshi Urano
Wei Zhao
Ken Higashimoto
Yuji Satoh
Shiroh Matsukura
Shinichi Kudo
Yoshihiko Kitajima
Haruhito Harada
Koichi Furukawa
Hideki Matsuzaki
Mitsuru Emi
Yusaku Nakabeppu
Kohji Miyazaki
Mutsuo Sekiguchi
Tsunehiro Mukai
Nagoya University · JPSaga Medical School Hospital · JPHokkaido Institute of Public Health · JPJapan Science and Technology Agency · JPJapan Synchrotron Radiation Research Institute · JPNippon Medical School · JPSaitama International Medical Center · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

O6-methylguanine-DNA methyltransferase (MGMT) repairs the cytotoxic and mutagenic O6-alkylguanine produced by alkylating agents such as chemotherapeutic agents and mutagens. Recent studies have shown that in a subset of tumors, MGMT expression is inversely linked to hypermethylation of the CpG island in the promoter region; however, how the epigenetic silencing mechanism works, as it relates to hypermethylation, was still unclear. To understand the mechanism, we examined the detailed methylation status of the whole island with bisulfite-sequencing in 19 MGMT non-expressed cancer cell lines. We found two highly methylated regions in the island. One was upstream of exon 1, including minimal promoter, and the other was downstream, including enhancer. Reporter gene assay showed that methylation of both the upstream and downstream regions suppressed luciferase activity drastically. Chromatin immunoprecipitation assay revealed that histone H3 lysine 9 was hypermethylated throughout the island in the MGMT negative line, whereas acetylation on H3 and H4 and methylation on H3 lysine 4 were at significantly high levels outside the minimal promoter in the MGMT-expressed line. Furthermore, MeCP2 preferentially bound to the CpG-methylated island in the MGMT negative line. Given these results, we propose a model for gene silencing of MGMT that is dependent on the epigenetic state in cancer.

Indexed as

DNA MethylationCpG IslandsDNA-Binding ProteinsGene Expression Regulation, NeoplasticGene SilencingGuanosineHistonesHumansNeoplasmsO(6)-Methylguanine-DNA Methyltransferase6'-O-methylguanosineDNA-Binding ProteinsGuanosineHistonesO(6)-Methylguanine-DNA Methyltransferase

Identifiers

PMID14647440
OpenAlexW2034535752

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.