Evidence map›Paper›PMID 1464326›Full record

ArticleThe EMBO journal1992

Chloroplast group III twintron excision utilizing multiple 5'- and 3'-splice sites.

D W Copertino, S Shigeoka, R B Hallick

Abstract read
In one paragraph

Article in The EMBO journal, 1992. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. A nuclear gene of eubacterial origin in Euglena gracilis reflects cryptic endosymbioses during protist evolution.Proceedings of the National Academy of Sciences of the United States of America · 1995
    Article
  10. Chloroplast ribosomes and protein synthesis.Microbiological reviews · 1994
    Review
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

D W CopertinoDepartment of Molecular and Cellular Biology, University of Arizona, Tucson 85721.
S Shigeoka
R B Hallick

Funding

SPLICING OF GROUP II AND GROUP III INTRONSR01GM035665 · NIGMS · UNIVERSITY OF ARIZONA · PI HALLICK, RICHARD B · 1985 to 2001
$583k
ORGANIZATION &EXPRESSION OF CHLOROPLAST TRNA GENESR01GM035625 · NIGMS · UNIVERSITY OF ARIZONA · PI HALLICK, RICHARD B · 1985 to 1993
–
NIGMS NIH HHS GM 35625NIGMS NIH HHS GM 35665
6 · The paper itself

Abstract

The chloroplast genes of Euglena gracilis contain more than 60 group II and 47 group III introns. Some Euglena chloroplast genes also contain twintrons, introns-within-introns. Two types of twintrons have previously been described, a group II twintron and a mixed group II/group III twintron. We report that four introns, three within the RNA polymerase subunit gene rpoC1 and one within ribosomal protein gene rpl16, with mean lengths twice typical group III introns, are a new type of twintron. The group III twintrons are composed of group III introns within other group III introns. The splicing of the twintrons was analyzed by PCR amplification, cloning and sequencing of cDNAs, and Northern hybridization. Excision of each group III twintron occurs by a two-step, sequential splicing pathway. Removal of the internal introns precedes excision of the external introns. Splicing of internal introns in three of the four group III twintrons involves multiple 5'- and/or 3'-splice sites. With two of the twintrons the proximal 5'-splice site can be spliced to an internal 3'-splice site, yielding alternative 'pseudo' fully spliced mRNAs. Excised group III introns of the rpl16 twintron are not linear RNA molecules but either lariat or circular RNAs, probably a lariat. The origins of alternative splicing and a possible evolutionary relationship between group II, group III and nuclear pre-mRNA introns are discussed.

Indexed as

Alternative SplicingChloroplastsIntronsAnimalsBase SequenceBlotting, NorthernCloning, MolecularDNADNA, Single-StrandedEuglena gracilisGenes, ProtozoanMolecular Sequence DataPolymerase Chain ReactionRNA, ProtozoanDNADNA, Single-StrandedRNA, Protozoan

Identifiers

PMID1464326
PMCPMC556982

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.