Evidence map›Paper›PMID 14633980›Full record

ArticleThe EMBO journal2003

Large T antigen on the simian virus 40 origin of replication: a 3D snapshot prior to DNA replication.

Maria G Gomez-Lorenzo, Mikel Valle, Joachim Frank, Claudia Gruss, Carlos Oscar S Sorzano, Xiaojiang S Chen, Luis Enrique Donate, Jose Maria Carazo

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 62 citations in OpenAlex.

  1. Article
  2. Review
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  6. Review
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  8. Dynamic look at DNA unwinding by a replicative helicase.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  9. Article
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  13. Article
  14. Review
  15. Article
  16. Article
  17. A double-hexameric MCM2-7 complex is loaded onto origin DNA during licensing of eukaryotic DNA replication.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Maria G Gomez-LorenzoCentro Nacional de Biotecnología, Campus Universidad Autónoma, 28049 Madrid, Spain.
Mikel Valle
Joachim Frank
Claudia Gruss
Carlos Oscar S Sorzano
Xiaojiang S Chen
Luis Enrique Donate
Jose Maria Carazo
Centro Nacional de Biotecnología · ES

Funding

STRUCTURAL ANALYSIS OF MACROMOLECULAR ASSEMBLYR37GM029169 · NIGMS · WADSWORTH CENTER · PI FRANK, JOACHIM · 1997 to 2006
$2.8M
NIGMS NIH HHS R37 GM29169
6 · The paper itself

Abstract

Large T antigen is the replicative helicase of simian virus 40. Its specific binding to the origin of replication and oligomerization into a double hexamer distorts and unwinds dsDNA. In viral replication, T antigen acts as a functional homolog of the eukaryotic minichromosome maintenance factor MCM. T antigen is also an oncoprotein involved in transformation through interaction with p53 and pRb. We obtained the three-dimensional structure of the full-length T antigen double hexamer assembled at its origin of replication by cryoelectron microscopy and single-particle reconstruction techniques. The double hexamer shows different degrees of bending along the DNA axis. The two hexamers are differentiated entities rotated relative to each other. Isolated strands of density, putatively assigned to ssDNA, protrude from the hexamer-hexamer junction mainly at two opposite sites. The structure of the T antigen at the origin of replication can be understood as a snapshot of the dynamic events leading to DNA unwinding. Based on these results a model for the initiation of simian virus 40 DNA replication is proposed.

Indexed as

AlgorithmsAntigens, Viral, TumorBase SequenceCrystallography, X-RayDNA PrimersDNA ReplicationDNA, ViralImage Processing, Computer-AssistedMolecular Sequence DataPolymerase Chain ReactionProtein ConformationReplication OriginSimian virus 40Antigens, Viral, TumorDNA PrimersDNA, Viral

Identifiers

PMID14633980
PMCPMC291853
OpenAlexW2038192101

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.