Evidence map›Paper›PMID 14632201›Full record

ArticleThe Journal of investigative dermatology2003

A novel splice variant of Pmel17 expressed by human melanocytes and melanoma cells lacking some of the internal repeats.

Sarah E Nichols, Dawn C Harper, Joanne F Berson, Michael S Marks

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of investigative dermatology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. PMEL Amyloid Fibril Formation: The Bright Steps of Pigmentation.International journal of molecular sciences · 2016
    Review
  5. Article
  6. Article
  7. Review
  8. Proprotein convertases process Pmel17 during secretion.The Journal of biological chemistry · 2011
    Article
  9. Article
  10. Article
  11. The secreted form of a melanocyte membrane-bound glycoprotein (Pmel17/gp100) is released by ectodomain shedding.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2010
    Article
  12. Article
  13. The repeat domain of the melanosome fibril protein Pmel17 forms the amyloid core promoting melanin synthesis.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Retrotransposon insertion in SILV is responsible for merle patterning of the domestic dog.Proceedings of the National Academy of Sciences of the United States of America · 2006
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Sarah E NicholsDepartment of Pathology and Laboratory Medicine, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania 19104-6082, USA.
Dawn C Harper
Joanne F Berson
Michael S Marks
University of Pennsylvania · US

Funding

Melanosome BiogenesisR01AR048155 · NIAMS · UNIVERSITY OF PENNSYLVANIA · PI MARKS, MICHAEL S · 2002 to 2017
$4.2M
MELANOSOME PROTEIN SORTING, FOLDING &ANTIGEN PROCESSINGR01EY012207 · NEI · UNIVERSITY OF PENNSYLVANIA · PI MARKS, MICHAEL S · 1998 to 2002
$718k
NEI NIH HHS R01 EY012207NIAMS NIH HHS R01 AR048155
6 · The paper itself

Abstract

Pmel17 is a approximately 100 kDa pigment cell specific glycoprotein that plays a crucial part in the morphogenesis of melanosome precursors. Anti-Pmel17 immunoprecipitates from metabolically pulse labeled melanoma cells and melanocytes contain, in addition to full-length Pmel17, a glycoprotein that migrates with a lower relative molecular weight. Here we show that this glycoprotein is encoded by an mRNA that results from alternative splicing of the human Pmel17 gene from which a cryptic intron is excised. Immunoprecipitation recapture experiments showed that this glycoprotein contained both the N- and C-termini of full-length Pmel17. Sequence analysis of cDNA corresponding to the alternatively spliced form reveals the loss of three of 10 imperfect direct repeats from the central region of the lumenal domain. The product of the splice variant is processed with similar kinetics to full-length Pmel17, and localizes similarly to late endosomes when expressed ectopically in nonpigment cells. We speculate that truncation of the repeat region within Pmel17 alters either fibrillogenic activity or the interaction of Pmel17 with melanin intermediates. The expression of an alternatively spliced product may furthermore affect the cohort of peptides generated for recognition of melanoma cells by tumor-directed T lymphocytes.

Indexed as

MelanomaRNA SplicingSkin NeoplasmsAmino Acid SequenceBase SequenceCell Line, TumorEpitopesgp100 Melanoma AntigenHumansMelaninsMelanocytesMelanosomesMembrane GlycoproteinsMolecular Sequence DataProteinsProtein Structure, TertiaryEpitopesgp100 Melanoma AntigenMelaninsMembrane GlycoproteinsPMEL protein, humanProteinsRNA, Messenger

Identifiers

PMID14632201
PMCPMC2793674
OpenAlexW2087355702

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.