Evidence map›Paper›PMID 14631041›Full record

ArticleScience (New York, N.Y.)2003

Nucleolar clustering of dispersed tRNA genes.

Martin Thompson, Rebecca A Haeusler, Paul D Good, David R Engelke

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 181 papers.

0numbers the graph read from it
0cells of the map it votes in
181citing papers in PubMed
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

181 citing papers in PubMed, 304 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. RNA modifying enzymes shape tRNA biogenesis and function.The Journal of biological chemistry · 2024
    Review
  7. Review
  8. The life and times of a tRNA.RNA (New York, N.Y.) · 2023
    Review
  9. Nucleolar stress: Friend or foe in cardiac function?Frontiers in cardiovascular medicine · 2022
    Review
  10. Review
  11. Article
  12. Article
  13. Review
  14. Close to the edge: Heterochromatin at the nucleolar and nuclear peripheries.Biochimica et biophysica acta. Gene regulatory mechanisms · 2021
    Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

121 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Martin ThompsonDepartment of Biological Chemistry, University of Michigan, Ann Arbor, MI 48109-0606, USA.
Rebecca A Haeusler
Paul D Good
David R Engelke
University of Michigan · US

Funding

PREDOCTORAL TRAINING IN GENETICST32GM007544 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MORAN, JOHN V. · 1985 to 2022
$11.3M
Transcriptional Silencing Near tRNA GenesR01GM063142 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ENGELKE, DAVID R · 2001 to 2004
$1.2M
NIGMS NIH HHS GM63142NIGMS NIH HHS R01 GM063142NIGMS NIH HHS T32 GM007544
6 · The paper itself

Abstract

Early transfer RNA (tRNA) processing events in Saccharomyces cerevisiae are coordinated in the nucleolus, the site normally associated with ribosome biosynthesis. To test whether spatial organization of the tRNA pathway begins with nucleolar clustering of the genes, we have probed the subnuclear location of five different tRNA gene families. The results show that tRNA genes, though dispersed in the linear genome, colocalize with 5S ribosomal DNA and U14 small nucleolar RNA at the nucleolus. Nucleolar localization requires tRNA gene transcription-complex formation, because inactivation of the promoter at a single locus removes its nucleolar association. This organization of tRNA genes must profoundly affect the spatial packaging of the genome and raises the question of whether gene types might be coordinated in three dimensions to regulate transcription.

Indexed as

Genes, FungalCell NucleolusDNA Polymerase IIDNA Polymerase IIIDNA, RibosomalGenes, rRNAGenome, FungalIntronsMultigene FamilyPromoter Regions, GeneticRNA, FungalRNA, RibosomalRNA, Ribosomal, 5SRNA, Small NucleolarRNA, TransferRNA, Transfer, GlnDNA Polymerase IIDNA Polymerase IIIDNA, RibosomalRNA, FungalRNA, RibosomalRNA, Ribosomal, 5SRNA, Small NucleolarRNA, TransferRNA, Transfer, GlnRNA, Transfer, GluRNA, Transfer, GlyRNA, Transfer, LeuRNA, Transfer, Lys

Identifiers

PMID14631041
PMCPMC3783965
OpenAlexW2055977185

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.