ArticlePlant physiology2003
Generation and analysis of end sequence database for T-DNA tagging lines in rice.
Article in Plant physiology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 99 papers.
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Who cites it
99 citing papers in PubMed.
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- Global identification of key genes for pollen germination in rice through high-throughput screening and gene editing.Journal of integrative plant biology · 2025Article
- Large-Scale Rice Mutant Establishment and High-Throughput Mutant Manipulation Help Advance Rice Functional Genomics.Plants (Basel, Switzerland) · 2025Review
- IDD10-NAC079 transcription factor complex regulates sheath blight resistance by inhibiting ethylene signaling in rice.Journal of advanced research · 2025Article
- Mechanism Analysis ofInternational journal of molecular sciences · 2025Article
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- Characterization of integration sites and transfer DNA structures in Agrobacterium-mediated transgenic events of maize inbred B104.G3 (Bethesda, Md.) · 2023Article
- Receptor for Activated C Kinase1B (RACK1B) Delays Salinity-Induced Senescence in Rice Leaves by Regulating Chlorophyll Degradation.Plants (Basel, Switzerland) · 2023Article
- Receptor for Activated C Kinase1B (OsRACK1B) Impairs Fertility in Rice through NADPH-Dependent HInternational journal of molecular sciences · 2022Article
- OsSNDP3 Functions for the Polar Tip Growth in Rice Pollen Together with OsSNDP2, a Paralog of OsSNDP3.Rice (New York, N.Y.) · 2022Article
- Ammonium transporter 1 increases rice resistance to sheath blight by promoting nitrogen assimilation and ethylene signalling.Plant biotechnology journal · 2022Article
- Function Analysis of theInternational journal of molecular sciences · 2022Article
- Mutation of G-protein γ subunit DEP1 increases planting density and resistance to sheath blight disease in rice.Plant biotechnology journal · 2021Article
- Elucidation of genomic organizations of transgenic soybean plants through de novo genome assembly with short paired-end reads.Molecular breeding : new strategies in plant improvement · 2021Article
- A Pathogen-Inducible Rice NAC Transcription Factor ONAC096 Contributes to Immunity AgainstFrontiers in plant science · 2021Article
- Overexpression ofFrontiers in plant science · 2021Article
- ONAC066, A Stress-Responsive NAC Transcription Activator, Positively Contributes to Rice Immunity AgainstFrontiers in plant science · 2021Article
- Indeterminate domain 3 negatively regulates plant erectness and the resistance of rice to sheath blight by controllingPlant signaling & behavior · 2020Article
39 more citing papers are in PubMed but not listed here.
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Authors and funding
28 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We analyzed 6749 lines tagged by the gene trap vector pGA2707. This resulted in the isolation of 3793 genomic sequences flanking the T-DNA. Among the insertions, 1846 T-DNAs were integrated into genic regions, and 1864 were located in intergenic regions. Frequencies were also higher at the beginning and end of the coding regions and upstream near the ATG start codon. The overall GC content at the insertion sites was close to that measured from the entire rice (Oryza sativa) genome. Functional classification of these 1846 tagged genes showed a distribution similar to that observed for all the genes in the rice chromosomes. This indicates that T-DNA insertion is not biased toward a particular class of genes. There were 764, 327, and 346 T-DNA insertions in chromosomes 1, 4 and 10, respectively. Insertions were not evenly distributed; frequencies were higher at the ends of the chromosomes and lower near the centromere. At certain sites, the frequency was higher than in the surrounding regions. This sequence database will be valuable in identifying knockout mutants for elucidating gene function in rice. This resource is available to the scientific community at http://www.postech.ac.kr/life/pfg/risd.
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