Evidence map›Paper›PMID 14625773›Full record

ArticlePlanta2004

Introns are key regulatory elements of rice tubulin expression.

Elisa Fiume, Paul Christou, Silvia Gianì, Diego Breviario

Abstract read
PubMed Publisher
In one paragraph

Article in Planta, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
5.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 86 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. The novel geneHorticulture research · 2020
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Gene coding for an elongation factor is involved in resistance against powdery mildew in common bean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017
    Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Elisa FiumeMolecular Biotechnology Unit, Fraunhofer Institute, Auf dem Aberg 1, 57329, Schmallenberg-Grafschaft, Germany.
Paul Christou
Silvia Gianì
Diego Breviario
Fraunhofer Society · DEIstituto di Biologia e Biotecnologia Agraria · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The genomic clones containing elements that regulate transcription of the three known rice ( Oryza sativa L.) alpha-tubulin isotypes ( Ostua1, Ostua2 and Ostua3) have been isolated. We have used these genomic regions to identify the regulatory elements that contribute to the expression of a marker gene ( gusA) in transient assays performed on rice calli derived from mature embryos. In all cases, we found that the first intron was required to achieve high levels of expression. This is consistent with data already reported for the alpha-tubulin isotype1 and indicates that a common regulatory mechanism is active on all the members of the rice alpha-tubulin gene family. The enhancing effect of the first intron was then tested by constructing illegitimate combinations of alpha-tubulin promoter and intron sequences ( Ostua1pro- Ostua2intro; Ostua1pro- Ostua3intro; Ostua2pro- Ostua3intro; Ostua3pro- Ostua2intro) and then by assaying beta-glucuronidase (GUS) activity in transformed rice calli. All illegitimate combinations expressed GUS at high level, suggesting that rice alpha-tubulin promoters and introns can be exchanged among the different isotypes. This did not occur when the intron of the rice beta-tubulin isotype16, known to enhance transcription of its own gene, was used in place of the alpha-tubulin intron. We have also analysed the effect of abscisic acid (ABA) on GUS expression in rice calli transformed with chimeric tubalpha2pro-intro:: gusA and tubalpha3pro-intro:: gusA constructs. ABA was able to reduce GUS expression only in the presence of the tubalpha2pro-intro sequence. We discuss these data in terms of mechanisms that in rice, as opposed to other plants, may control tubulin isotype-specific expression and the involvement of ABA in the regulation of alpha-tubulin expression.

Indexed as

Gene Expression Regulation, PlantAbscisic AcidBase SequenceGenetic MarkersIntronsMolecular Sequence DataOryzaPlant Growth RegulatorsPlant ProteinsPromoter Regions, GeneticProtein IsoformsTubulinAbscisic AcidGenetic MarkersPlant Growth RegulatorsPlant ProteinsProtein IsoformsTubulin

Identifiers

PMID14625773
OpenAlexW2032671916

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.