Evidence map›Paper›PMID 14624238›Full record

ArticlePLoS biology2003

Partially phosphorylated Pho4 activates transcription of a subset of phosphate-responsive genes.

Michael Springer, Dennis D Wykoff, Nicole Miller, Erin K O'Shea

Abstract read
In one paragraph

Article in PLoS biology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Perfect adaptation achieved by transport limitations governs the inorganic phosphate response inProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Inositol pyrophosphates: why so many phosphates?Advances in biological regulation · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Michael SpringerHoward Hughes Medical Institute, Department of Biochemistry and Biophysics, University of California, San Francisco, USA.
Dennis D Wykoff
Nicole Miller
Erin K O'Shea

Funding

REGULATION OF YEAST PHO5 GENER01GM051377 · NIGMS · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI O'SHEA, ERIN K. · 1994 to 2011
$3.7M
MECHANISM OF PHOSPHATE SENSING IN YEASTF32GM020762 · NIGMS · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI WYKOFF, DENNIS D · 2001 to 2003
$127k
REGULATION OF EXPORT OF PH04 FROM THE NUCLEUSF32GM019734 · NIGMS · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI RANK, NICOLE M · 1998 to 2000
$14k
NIGMS NIH HHS F32 GM019734NIGMS NIH HHS F32 GM020762NIGMS NIH HHS GM19734NIGMS NIH HHS GM20762NIGMS NIH HHS GM51377NIGMS NIH HHS R01 GM051377Wellcome Trust
6 · The paper itself

Abstract

A cell's ability to generate different responses to different levels of stimulus is an important component of an adaptive environmental response. Transcriptional responses are frequently controlled by transcription factors regulated by phosphorylation. We demonstrate that differential phosphorylation of the budding yeast transcription factor Pho4 contributes to differential gene expression. When yeast cells are grown in high-phosphate growth medium, Pho4 is phosphorylated on four critical residues by the cyclin-CDK complex Pho80-Pho85 and is inactivated. When yeast cells are starved for phosphate, Pho4 is dephosphorylated and fully active. In intermediate-phosphate conditions, a form of Pho4 preferentially phosphorylated on one of the four sites accumulates and activates transcription of a subset of phosphate-responsive genes. This Pho4 phosphoform binds differentially to phosphate-responsive promoters and helps to trigger differential gene expression. Our results demonstrate that three transcriptional outputs can be generated by a pathway whose regulation is controlled by one kinase, Pho80-Pho85, and one transcription factor, Pho4. Differential phosphorylation of Pho4 by Pho80-Pho85 produces phosphorylated forms of Pho4 that differ in their ability to activate transcription, contributing to multiple outputs.

Indexed as

Gene Expression Regulation, FungalTranscription, GeneticBlotting, NorthernBlotting, WesternChromatin ImmunoprecipitationCulture MediaCyclin-Dependent KinasesCyclinsDNA-Binding ProteinsDNA, ComplementaryGenes, FungalMicroscopy, FluorescenceModels, BiologicalModels, GeneticMolecular Sequence DataOligonucleotide Array Sequence AnalysisCulture MediaCyclin-Dependent KinasesCyclinsDNA-Binding ProteinsDNA, ComplementaryPHO4 protein, S cerevisiaePHO80 protein, S cerevisiaePHO85 protein, S cerevisiaePhosphatesPhosphopeptidesRepressor ProteinsSaccharomyces cerevisiae ProteinsTranscription Factors

Identifiers

PMID14624238
PMCPMC261874

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.