Evidence map›Paper›PMID 14613943›Full record

ArticleThe Journal of biological chemistry2004

Histone tail-independent chromatin binding activity of recombinant cohesin holocomplex.

Alexander Kagansky, Lita Freeman, Dmitry Lukyanov, Alexander Strunnikov

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 13 citations in OpenAlex.

  1. CTCF mediates chromatin looping via N-terminal domain-dependent cohesin retention.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Alexander KaganskyLaboratory of Gene Regulation and Development, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, Maryland 20892, USA.
Lita Freeman
Dmitry Lukyanov
Alexander Strunnikov
Eunice Kennedy Shriver National Institute of Child Health and Human Development · US

Funding

SMC PROTEINS AND OTHER CHROMOSOMAL PROTEINS IN MITOTIC CHROMOSOME SEGREGATIONZ01HD001903 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI STRUNNIKOV, ALEXANDER · 1996 to 2008
$1.3M
Intramural NIH HHS Z01 HD001903Intramural NIH HHS Z99 AI999999
6 · The paper itself

Abstract

Cohesin, an SMC (structural maintenance of chromosomes) protein-containing complex, governs several important aspects of chromatin dynamics, including the essential chromosomal process of sister chromatid cohesion. The exact mechanism by which cohesin achieves the bridging of sister chromatids is not known. To elucidate this mechanism, we reconstituted a recombinant cohesin complex and investigated its binding to DNA fragments corresponding to natural chromosomal sites with high and low cohesin occupancy in vivo. Cohesin displayed uniform but nonspecific binding activity with all DNA fragments tested. Interestingly, DNA fragments with high occupancy by cohesin in vivo showed strong nucleosome positioning in vitro. We therefore utilized a defined model chromatin fragment (purified reconstituted dinucleosome) as a substrate to analyze cohesin interaction with chromatin. The four-subunit cohesin holocomplex showed a distinct chromatin binding activity in vitro, whereas the Smc1p-Smc3p dimer was unable to bind chromatin. Histone tails and ATP are dispensable for cohesin binding to chromatin in this reaction. A model for cohesin association with chromatin is proposed.

Indexed as

Chondroitin Sulfate ProteoglycansSaccharomyces cerevisiae ProteinsAdenosine TriphosphateAnimalsBinding SitesBlotting, WesternCell Cycle ProteinsChromatinChromosomal Proteins, Non-HistoneCohesinsDimerizationDNADNA-Binding ProteinsDrosophilaEscherichia coliFungal ProteinsAdenosine TriphosphateCell Cycle ProteinsChondroitin Sulfate ProteoglycansChromatinChromosomal Proteins, Non-HistoneCohesinsDNADNA-Binding ProteinsFungal ProteinsHistonesNuclear ProteinsNucleosomesRecombinant ProteinsSaccharomyces cerevisiae ProteinsSMC3 protein, S cerevisiaeStructural Maintenance of Chromosome Protein 1

Identifiers

PMID14613943
PMCPMC2680671
OpenAlexW2002516756

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.