ArticlePlant physiology2003
Genome-wide characterization of the lignification toolbox in Arabidopsis.
Article in Plant physiology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 330 papers, 1 of them a synthesis that pooled it.
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Who cites it
330 citing papers in PubMed, 1 synthesis or guideline pooled it, 835 citations in OpenAlex.
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- Article
- Genome-Wide Analysis of the Cinnamoyl-CoA Reductase (CCR) Gene Family and Its Involvement in Lignin Biosynthesis and Stress Responses in Six Tea Plant Cultivars.International journal of molecular sciences · 2026Article
- Regulatory Roles of MYB Transcription Factors in Root Barrier Under Abiotic Stress.Plants (Basel, Switzerland) · 2026Review
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- Loss-of-function mutation of two phenylpropanoid pathway genes PAL1 and PAL2, coupled with MYB46 upregulation, increases fermentable sugar yield and ethanol production.Journal of biological engineering · 2025Article
- Current understanding of the role of the cell wall in Cuscuta parasitism.Plant biology (Stuttgart, Germany) · 2025Review
- The role of PagC3H3 in lignin biosynthesis and insect resistance in Populus alba × Populus glandulosa.Plant cell reports · 2025Article
- An enhanced gene function analysis platform for Gastrodia Elata integrating further omics data and analysis tools.BMC plant biology · 2025Article
- A 3R-MYB transcription factor is involved in Methyl Jasmonate-Induced disease resistance in Agaricus bisporus and has implications for disease resistance in Arabidopsis.Journal of advanced research · 2025Article
- Multi-Time Point Transcriptome Analysis and Functional Validation RevealedInternational journal of molecular sciences · 2025Article
- Nitrate Modulates Fruit Lignification by RegulatingInternational journal of molecular sciences · 2025Article
- Identification of the Cinnamyl Alcohol Dehydrogenase Gene Family inPlants (Basel, Switzerland) · 2025Article
- Genome-wide characterization of PAL, C4H, and 4CL genes regulating the phenylpropanoid pathway in Vanilla planifolia.Scientific reports · 2025Article
- Genome-Wide Identification Analysis of the 4-Coumarate: Coa Ligase (4CL) Gene Family inPlants (Basel, Switzerland) · 2025Article
- Genome-wide identification and expression analysis of Phenylalanine Ammonia-Lyase (PAL) in cucumber.PloS one · 2025Article
- Phenolic amides (avenanthramides) in oats - an update review.Bioengineered · 2024Review
- Biosynthesis of Phenolic Compounds ofInternational journal of molecular sciences · 2024Article
- Morphological and genetic characterization of the muscadine fruit abscission zone.Horticulture research · 2024Article
- Exploring Lignin Biosynthesis Genes in Rice: Evolution, Function, and Expression.International journal of molecular sciences · 2024Article
270 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
5 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Lignin, one of the most abundant terrestrial biopolymers, is indispensable for plant structure and defense. With the availability of the full genome sequence, large collections of insertion mutants, and functional genomics tools, Arabidopsis constitutes an excellent model system to profoundly unravel the monolignol biosynthetic pathway. In a genome-wide bioinformatics survey of the Arabidopsis genome, 34 candidate genes were annotated that encode genes homologous to the 10 presently known enzymes of the monolignol biosynthesis pathway, nine of which have not been described before. By combining evolutionary analysis of these 10 gene families with in silico promoter analysis and expression data (from a reverse transcription-polymerase chain reaction analysis on an extensive tissue panel, mining of expressed sequence tags from publicly available resources, and assembling expression data from literature), 12 genes could be pinpointed as the most likely candidates for a role in vascular lignification. Furthermore, a possible novel link was detected between the presence of the AC regulatory promoter element and the biosynthesis of G lignin during vascular development. Together, these data describe the full complement of monolignol biosynthesis genes in Arabidopsis, provide a unified nomenclature, and serve as a basis for further functional studies.
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